| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5800 |
|---|
| Symbol | |
|---|
| ID | 8361980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7367829 |
|---|
| End bp | 7370375 |
|---|
| Gene Length | 2547 bp |
|---|
| Protein Length | 848 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644967940 |
|---|
| Product | Peptidyl-dipeptidase Dcp |
|---|
| Protein accession | YP_003125421 |
|---|
| Protein GI | 256424768 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0339] Zn-dependent oligopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.882586 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGC TTTTTAACAT AAATGACATC ACGATAAGAA CCGAGCTCAA AACCGGAGAT
CTCGGTTATG TAGCTTACAT GCACGGCAGG ATCTATAACA GCGAACTGGG TTACGGCTTT
AACTTCGAGC GCTACGTGCT GGAAGGATTG CTGGAATTCT CCCGCCAGTA CGATCCGCAG
AAAGACCGTG TATGGATCTG TGAATATAAA GACCGCATTG TTGGCTTTCT GATGGCACTT
AGCCGAGGGA AAACCCTGCA GCTAAGGTAT TTCATCATCG AGCCTGAATT CCGTGGCGCT
GGCCTTGGAA AAAGGCTGAT GGACAGCTTC ATGGCATTCA TGGATGAACA GCAGTTCGAA
CATGCCTATC TCTGGACCAC CAACCAGCAG GATACCGCTG TATCGCTATA CCTCCGCCAT
GGTTTTATGC TCACCGAAGA AAAAGACAGC AAGGCTTTCG ACAAACCGCT GACAGAAAAA
AGGTACGACC TGTTCAGAAC TCCGAATCCG CTGCTGGAAC CGTACGACAC GCCTTACGGC
CTCCCTCCTT TTGACCTCAT CACCCCGGCC CGTTACCTGC CGGCCTTTGA AGCAGCCATG
GAGGAACACC GGAAAAATAT AGCACAGATC ACCAGTCTGC AAACGCCTCC CTCCTTCGCA
GATACCCTCG AGGCTTTTGA AAAAAGCGCT AGGTTATTAC GTAATGTAAG CGCTGTATTC
CATAACCTCA CCTCTGCCAA TACCTCTCCG GAACTGGAAA ACATCTCCCG TCAGCTGGCT
CCTATGCTCG CCAGACACAG TGATGATATC TACCTGGATG CGGCTTTATT CAACAGGATA
AAAGCCCTGT ATGAAAGAAG GGATGCTCTG ACCCTGACCG GTGAACAGGC AAAACTGCTG
GAAAAAGCCT ATAAAGACTT TGTACGCAGC GGCGCTAACC TGGACGCAGA CAAACAAACA
AGACTACGCG AGATCAATAA ACAACTGTCA TTACTCACCG TACGCTTCGG ACAGCACCTG
CTGGCAGAAA CGAATCACTA CGAAATGGTG ATCACAGCAG AGAAAGACCT CGCCGGTCTC
CCCGACTCTC TCATAGAAGC AGCTGCCCTG TCAGCAAAAG CAGCCGGTAA AGAAAGCGGC
TGGCGCTTTA CCTTACACAA CGCCAGCGTA ATGCCTTTCC TGCAATATGC GGATCAGCGT
CACCTGCGGC AAGAGATCTA TGAAGCATAC ATAAACCGTT GTAACCACAA CGACGAAAGA
GATAATAAAG AGATCGTTAC ACAACTCGCA GCCCTGAGAG CAGAAAAAGC GGCGCTGCTG
GGATATGCTT CTCATGCGGA CTTCATCCTG GAAGAAAACA TGGCGAAAAC ACCTGCGAAA
GCCAATGAAC TGTTACAGCA ATTATGGCAT GCCGCCCTGC CTGTAGCGAA ACAGGAAGCC
GTTGAAATGC AGGCGCTCAT GAACCGCGAA GGAAAAGGTG AACAACTCGA AGCCTGGGAT
TGGTTCTATT ATGCAGATAA AGTTAGAAAA GAGAAATATG CTTACGATGC AGAAGCATTA
CGTCCATACT TCAAACTGGA GAACGTACGG GATGGCCTCT TCTTCACCGC AAAAAAACTC
TACGGACTGC ACTTCCATCT GCTGAAAGAC GTTCCGGTTT ACCATGAAGA AGTATCTGCC
TACGAAGTAA AAGGCGATGA TGGTACACTG GTCGGATTAC TCTATCTGGA CTTCCATCCC
CGTACCTCCA AACGTGGCGG TGCATGGATG ACCTCTTACC GCAAACAAGC CATTAATGCC
AACGGACGCG TTGCACCGGT GATCTCCATC GTATGTAACT TCTCCCGGCC AACTGCTACT
CAACCGGCTT TATTGACACC GGATGAAGCG GAAACCTTCT TCCATGAAGC CGGTCACGCA
TTACATGGCC TGCTGTCAGA TGTGACGTAT GAGACCCTGT CAGGTACCTC CGTACCGCGT
GACTTTGTAG AACTGCCTTC TCAGGTAATG GAACACTGGG CATTCGAACC GGAAGTACTG
GCGCAATATG CGAAGCATTA CGAAACCGGA GAACTGATCC CTGCAGCACT CGTAGAAAAG
ATGAAAGCTG CATCCAGATT CAACCAGGGG TTTGCGACCG TAGAATACCT CGCCGCTTCC
CTGCTGGACA TGGCCTATCA CACACTGCCC GCCGGTAACA ATATCGTACC ACTGGACTTT
GAAAAAGAAC AGATGGATAC TATCGGACTG ATCCCGCAGA TTGCACCAAG ATACCGCAGC
ACTTACTTCC AGCACATATT TGCAGGAGGC TATTCCGCCG GATATTATAG CTATATATGG
TCAGAAGTAC TGGATAGCGA CGCCTTTGCC GCTTTCAAAG AAACTGGCAA TATCTTCGAT
CCTGCTACTG CACAGGCATT CAGGAAAAAT ATCCTGGAGA AAGGAGGAAC AGGAGAGCCA
ATGGACTTAT ATGTTGCTTT CCGTAAAAGA GAACCGGATG TGAAGTACCT GCTGCAACAC
AGAGGACTTG AAACAAGTAC GCATTAA
|
|---|
| Protein sequence | MAQLFNINDI TIRTELKTGD LGYVAYMHGR IYNSELGYGF NFERYVLEGL LEFSRQYDPQ
KDRVWICEYK DRIVGFLMAL SRGKTLQLRY FIIEPEFRGA GLGKRLMDSF MAFMDEQQFE
HAYLWTTNQQ DTAVSLYLRH GFMLTEEKDS KAFDKPLTEK RYDLFRTPNP LLEPYDTPYG
LPPFDLITPA RYLPAFEAAM EEHRKNIAQI TSLQTPPSFA DTLEAFEKSA RLLRNVSAVF
HNLTSANTSP ELENISRQLA PMLARHSDDI YLDAALFNRI KALYERRDAL TLTGEQAKLL
EKAYKDFVRS GANLDADKQT RLREINKQLS LLTVRFGQHL LAETNHYEMV ITAEKDLAGL
PDSLIEAAAL SAKAAGKESG WRFTLHNASV MPFLQYADQR HLRQEIYEAY INRCNHNDER
DNKEIVTQLA ALRAEKAALL GYASHADFIL EENMAKTPAK ANELLQQLWH AALPVAKQEA
VEMQALMNRE GKGEQLEAWD WFYYADKVRK EKYAYDAEAL RPYFKLENVR DGLFFTAKKL
YGLHFHLLKD VPVYHEEVSA YEVKGDDGTL VGLLYLDFHP RTSKRGGAWM TSYRKQAINA
NGRVAPVISI VCNFSRPTAT QPALLTPDEA ETFFHEAGHA LHGLLSDVTY ETLSGTSVPR
DFVELPSQVM EHWAFEPEVL AQYAKHYETG ELIPAALVEK MKAASRFNQG FATVEYLAAS
LLDMAYHTLP AGNNIVPLDF EKEQMDTIGL IPQIAPRYRS TYFQHIFAGG YSAGYYSYIW
SEVLDSDAFA AFKETGNIFD PATAQAFRKN ILEKGGTGEP MDLYVAFRKR EPDVKYLLQH
RGLETSTH
|
|---|
| |