| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5666 |
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| Symbol | |
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| ID | 8361846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7226261 |
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| End bp | 7228003 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644967809 |
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| Product | Endoribonuclease L-PSP |
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| Protein accession | YP_003125290 |
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| Protein GI | 256424637 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family
[COG2234] Predicted aminopeptidases |
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| TIGRFAM ID | [TIGR00004] endoribonuclease L-PSP, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.106128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.852479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCGG ACAATAAACA GATCGCTCAG GTCAGCAAGA ACGGTATTAT CAGCCTCCTT
TTATTGCTCC TGGGATATGG GGTAATGGCA CAATCTGCCC CTACCGATGA TTCTATGCTG
CTCCGCAGGA TCTACGACGA ATCTTTGCTG CATAGCGAAG CATATCATAA CCTGCAGGAG
CTGACCACCA CAATAGGTGA GCGACTGACG GGCACACCCC AGGCTACACA GACGATAGAA
TGGGGGAGGA CCCTGTTAAA GAAAGCGGGT GCCGATAGCG TATACCTCCA AAAGGTATGG
GTACCCCGCT GGAACAGGGG AAAGATCGCT TCAGCGTCCG TCCCCTATAA GGACAATACG
ATGCAACTGA ACATCTGCGC ATTGGGAGGT TCCATTGGTA CCAACGGCCG CCTCACAGCG
CCCGTCATTG AGATCAGGTC CTGGCGGCAA CTTGACTCAT TACCTGCGAA GGATGTCAGG
GGAAAGATCG TCTTCTTTAA CCGGCCCATG GATCCTCGTA TTATAGAACC TTTTACGGCC
TACCTGGAAG CTGTCGACCA ACGGAACACC GGGGCCGTTG CTGCCGCCAG AAAAGGGGCG
ATTGCCACGA TTGTACGCTC ATTGACACTG TCAAAGGATG ATCTGCCACA TACAGGGGCT
GTCTCCTATG ATAGTAGTGT AGCCATGATA CCCGCGGCAG CGGTAAGTAC CAATGGTGCT
GACTGGCTGA GTAAAGCCCT GATACAGAAG CCGGAACTCC GGCTCTCCCT GGAACTGGAC
TGTCAACGTT TAACAGACGT GGCATCCGCC AATGTCATCG CAGAAATAAA AGGTACCGTA
GCGCCTAATG AGGTTGTTAC GATCGGCGCA CATATTGACT CCTGGGATCT GTCGGAGAGT
GCCAGTGACG ATGGCGCCGG ACTGGTACAG GTCATAGACG CCTTACGCAT CCTAAGAACA
GTGTTACCAC ATCCGGCAAG AACGATCAGG ATCATCCTGT ATATCAACGA AGAAAATGGG
AATCGCGGTG GATTGCAATA TGCCGCATGG GCAAGACAAT CCCGTGAACA ACACCTGGCC
GTATTTGAAA CAGATGCTGG CGGATTCTTT CCCCATGGCT TTCGGATCGA TGCAGCTCCT
GAGATCATGG CTATATTCAA AAACCGGAGT ACGTTATTCA GACCCTATAA AGCAGACGGC
CTGACCCCGC AACATCGTGG GGTAGACATA GGTCCGATGA AGGGAATTGC AAAAGCAGTC
ATTAGTCTGG ATTGTGATGA TCAGCGTTTA TTTGATATTC ATCATTCTGC TGCAGATACC
TTCGATAAGG TCAGTAAACG TGAACTGGAG CTGGGTGCCG CTGCTTTAGC TGGTATGGCC
GCTCTGACGA GCGAGCACGG ATTAGATGTA CCAGCGCCTT TCAGCAATAT ACGGTCCGCC
AGGCAGACAT TTTTTGTTGC AGGACAGATA GGAATCAATG AAGGGAGAGG AAAAAAGACA
AGCTTCAAAG AGGAAACAAC ACAGGCATTG ACCAATGTAC AACAGGCATT AGCATCCGCA
GGATTGACAT TAGGTGACGT AGTAAACGTG ACAGTTTACC TCAGGGAAAT TAAACAGCTG
AATGATTTTA ATGAAGTTTA CCGCACATTC TTTTCTGCTC CCTATCCTGC CCGTACCCTG
GTACAGGTAG ATAAACTGGT GAAGGATGCC GCTGTAGAGA TTTCAGTGGT GGCTGGGAAC
TAA
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| Protein sequence | MAADNKQIAQ VSKNGIISLL LLLLGYGVMA QSAPTDDSML LRRIYDESLL HSEAYHNLQE
LTTTIGERLT GTPQATQTIE WGRTLLKKAG ADSVYLQKVW VPRWNRGKIA SASVPYKDNT
MQLNICALGG SIGTNGRLTA PVIEIRSWRQ LDSLPAKDVR GKIVFFNRPM DPRIIEPFTA
YLEAVDQRNT GAVAAARKGA IATIVRSLTL SKDDLPHTGA VSYDSSVAMI PAAAVSTNGA
DWLSKALIQK PELRLSLELD CQRLTDVASA NVIAEIKGTV APNEVVTIGA HIDSWDLSES
ASDDGAGLVQ VIDALRILRT VLPHPARTIR IILYINEENG NRGGLQYAAW ARQSREQHLA
VFETDAGGFF PHGFRIDAAP EIMAIFKNRS TLFRPYKADG LTPQHRGVDI GPMKGIAKAV
ISLDCDDQRL FDIHHSAADT FDKVSKRELE LGAAALAGMA ALTSEHGLDV PAPFSNIRSA
RQTFFVAGQI GINEGRGKKT SFKEETTQAL TNVQQALASA GLTLGDVVNV TVYLREIKQL
NDFNEVYRTF FSAPYPARTL VQVDKLVKDA AVEISVVAGN
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