| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5621 |
|---|
| Symbol | |
|---|
| ID | 8361798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7172288 |
|---|
| End bp | 7173172 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644967764 |
|---|
| Product | transcriptional regulator, MerR family |
|---|
| Protein accession | YP_003125248 |
|---|
| Protein GI | 256424595 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.695249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACTG AGAACTATTC AATAAAGGAT CTGGAAAAAC TGTCCGGGAT CAAAGCGCAT
ACGCTGCGGA TCTGGGAGAA ACGCTATGGT ATCATTAAAC CAGGTAGAAC GGATACCAAT
ATCCGGTATT ATGGCAATGA GGAACTTAAA AAGATCCTGA ATATCAGTCT GCTGAATCAG
CACGGGTATA AGATATCCGC TATCAGCGAA ATGAATGACG AGGAGATTGC GGAGAAAGCT
TCTTCCGTTG GATTATTCAG TCAAAACGGC TCCACTGACG AAAACCTGCT GCTCAGTCTC
ATAGACATGG ATGAACAGCT GTTCAATATC ACCTTTTCCG GACTGATGAT GAAAAGAGGT
TTCGAAGACA CCATCATTTC CTCGATTTTC CCTTTCTTCC ACCGGATCGG CATTATGTGG
CAGGCCGGTA CGATCAATCC GGCACAGGAA CACTTCTTTT CGAATCTTAT CAGGAGTAAG
ATCATCATGG CCACAGAAGC ACTCAATAAA CATCCCGAAA CCAATGCAGA CGTGGCGCTC
TTATTCCTCC CTGAAGGAGA ATTGCATGAA ATAGGATTAT TGTTTTATAA CTATGCATTA
AGGGCAAGGG GCTACCGTAC CATTTATCTG GGGCAGTCCG TCCCTCATGA CAGCCTTTAC
CGGGTGATCA CGATATGCAA ACCCAACCTG ATTGTTACAG GCATGACCAA CCCTATTACC
TCCAAAGATT TCATGGCGTT CTCTCAGCAG CTTTGCGAAT TCGCACCAGG TCTGAATATC
TACTTTACAG GACCTATCCC TGCCGGTGTC CGGGACATAC TCCCTTCAAA TGCACGCTCA
GTAAAGGACC TGCTCTCTCT GATGCAGATC ACACAAAAAG CCTGA
|
|---|
| Protein sequence | MATENYSIKD LEKLSGIKAH TLRIWEKRYG IIKPGRTDTN IRYYGNEELK KILNISLLNQ
HGYKISAISE MNDEEIAEKA SSVGLFSQNG STDENLLLSL IDMDEQLFNI TFSGLMMKRG
FEDTIISSIF PFFHRIGIMW QAGTINPAQE HFFSNLIRSK IIMATEALNK HPETNADVAL
LFLPEGELHE IGLLFYNYAL RARGYRTIYL GQSVPHDSLY RVITICKPNL IVTGMTNPIT
SKDFMAFSQQ LCEFAPGLNI YFTGPIPAGV RDILPSNARS VKDLLSLMQI TQKA
|
|---|
| |