| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5620 |
|---|
| Symbol | |
|---|
| ID | 8361797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7170515 |
|---|
| End bp | 7172008 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967763 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_003125247 |
|---|
| Protein GI | 256424594 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.476172 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGTA CCGCGATTGT CATAGGTGGA GGTTTATCAG GACTCTCGGC AGCTATTAGT
CTGGCGAAAG AGGGCTATAC CGTGACATTG GTTGAGCGGC ATGATCAGAC TGGCGGGCGG
GCAAGGATGT TTGAGGCAGC GGGATTCAGG TTTGATATGG GGCCCAGCTG GTATTGGATG
CCAGAAGTGG CAGCGGATTT CTTCCGGCAG CATGGACGTT CGATTGATGA TTATGTGACC
CTGCAGCGGC TGGACCCTTC TTACCAGGTT ATTTTCGGGA AGGGAGAGCA GGTCAGTCTG
CCGTCTTCAT TTGCCGCATT ACAGGCCGTA TTTGAAGGGA TTGAGCCTGG TGCAGGTTCC
CGTCTTGAGA AGTTCCTGGA GGAAGCGGAG TATAAGTATA ACACAGCAAT GTCGGCCTAC
GTCAGGAAGC CAGGATTGCA TGTGCTTGAA TTGTGTAACG GAGAAGTGAT GCGTTCTTTT
CTGAAGATGG ATATGTTACA GTCTTTCAGT CATCATGCCC GGAAATATTT CAAAGATGAA
CGGTTGTTGA AAATCATTGA GTTCCCTGTT TTGTTCCTCG GCGCTACTCC TGAACGGATT
CCTGCCATGT ACAGCATGAT GAACTATGCT GATATGAAGC TGGGTACCTG GTATCCGGAA
GGCGGGATGC ATATGCTGGT CAGTGCTTTT ACCAGACTGG CAGAGGAATC AGGTGTACGT
ATTATGCTGA ATACTACTGT GGAGGGAATG GATGTGCAGG GGAGTCGTAT AACGGGTGTA
GGGACCAACA GGGGAAAACT GACTGCCGAT GTCATCGTGT CGGGAGCAGA TTATCATCAT
ACAGACCGTC AGTTGTTGCC ATCCGGAAAA GCCAATTATA GTGCTCAGTA CTGGGAGAAG
CGCGTAATGG CGCCATCCTG TCTTATCTAC TACGTCGGCG TGCGCAGGAA GATTGCACGA
CTGCAGCATC ATAATCTTTT CTTTGAAGAT GATTTCCGGC AACACGCGGA AGCCATTTAT
AATGCTCCTG AATGGCCGCA GAAACCGCTT TTCTATCTTT GCTGTCCTTC AAAAACAGAT
GCTACTGTAG CACCCCCGGG TATGGAGAAC TTGTTTTTTC TCATTCCTAC GGCTCCTGGT
CTGCTGGATA CACCGGACAT AAGAGATCAG TACCTGCAAT TAGTACTCAG GAAAACGGAA
GCATTCTGCG GAGAAGATAT AACGCAGCAG ATTGTCTATT CCCGCAGTTA TGCATGTACA
GATTTTATCG CTGATTACAG CGCATTTAAA GGGAATGCGT ATGGTCTTGC CAATACATTG
GGGCAGACCG CTTTTCTGAA GCCATCTATC AGACATAAGA AGATTACCAA TTTATTTTTT
ACCGGTCAGC TGACAGTGCC GGGACCAGGT GTGCCACCGG CAATTATTTC CGGACAGGTG
GTGGCGGAAT ATATCTCAAA ACAAAAAGTA TCTCGTTATG AAAGCGTTAT TTGA
|
|---|
| Protein sequence | MASTAIVIGG GLSGLSAAIS LAKEGYTVTL VERHDQTGGR ARMFEAAGFR FDMGPSWYWM
PEVAADFFRQ HGRSIDDYVT LQRLDPSYQV IFGKGEQVSL PSSFAALQAV FEGIEPGAGS
RLEKFLEEAE YKYNTAMSAY VRKPGLHVLE LCNGEVMRSF LKMDMLQSFS HHARKYFKDE
RLLKIIEFPV LFLGATPERI PAMYSMMNYA DMKLGTWYPE GGMHMLVSAF TRLAEESGVR
IMLNTTVEGM DVQGSRITGV GTNRGKLTAD VIVSGADYHH TDRQLLPSGK ANYSAQYWEK
RVMAPSCLIY YVGVRRKIAR LQHHNLFFED DFRQHAEAIY NAPEWPQKPL FYLCCPSKTD
ATVAPPGMEN LFFLIPTAPG LLDTPDIRDQ YLQLVLRKTE AFCGEDITQQ IVYSRSYACT
DFIADYSAFK GNAYGLANTL GQTAFLKPSI RHKKITNLFF TGQLTVPGPG VPPAIISGQV
VAEYISKQKV SRYESVI
|
|---|
| |