| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5523 |
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| Symbol | |
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| ID | 8361700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 7048186 |
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| End bp | 7048779 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967669 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003125153 |
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| Protein GI | 256424500 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0545297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.541298 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCGAAA AGCATATCAG TGACGGGGAC TTGCTACAGC TGCTTAAAGG AGATGATACC
GCTGCTTTCG AGACCCTGTA CAACCGATAC TGGAAATCAC TCTATACCAG GGCCTGCCAG
CGGGTCGATG CAGACGATGC AAAAGACCTC GTACAGGAGG TGATGCTGAG CCTTTGGCGC
AGACGCCAGG AAATACCTGT ATTTAAGGAA GGAGAATTCG CAAAATACCT GCACGCCGCT
ATCAAATACC GGGTGATCAG TCACTATGCC TTTAGTACGG CAGAAATCAA AAAACTGGCC
CTCTTTGACG TACTGGATAG CCAGGAATCT ACTGACAGAC TGGAAACAAA AGAATTAACT
GCTAAGATTG CCGCAGTCGT GGCGCAATTG CCTGCCCGTA TGCAGCAGAT TTTCCGGATG
AGCCGGGAAG AAGACCTTTC CATTGCTGAA ATAGCCCGTA AACTGAATCT TTCTGAACAA
ACGGTCAAAA ACCAACTGAC CGAGGCCCTG CGCAGGATGC GTAATTCGCT GAAAAATAGC
TCCTCAGGCG ATTGGGCGTT TATTGTGGCT TATATTTTCT GCCATCTGAA ATAA
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| Protein sequence | MFEKHISDGD LLQLLKGDDT AAFETLYNRY WKSLYTRACQ RVDADDAKDL VQEVMLSLWR
RRQEIPVFKE GEFAKYLHAA IKYRVISHYA FSTAEIKKLA LFDVLDSQES TDRLETKELT
AKIAAVVAQL PARMQQIFRM SREEDLSIAE IARKLNLSEQ TVKNQLTEAL RRMRNSLKNS
SSGDWAFIVA YIFCHLK
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