Gene Cpin_5249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5249 
Symbol 
ID8361426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6648405 
End bp6648695 
Gene Length291 bp 
Protein Length96 aa 
Translation table11 
GC content58% 
IMG OID644967397 
ProductPAAR repeat-containing protein 
Protein accessionYP_003124881 
Protein GI256424228 
COG category[S] Function unknown 
COG ID[COG4104] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0000530651 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCCCGG CAGCAAGATT AACAGATATG CATGTTTGCC CCATGTCGAC AGGCCCGGTT 
CCCCACGTTG GTGGTCCTGT CAGTGGTCCC GGTGTACCTA CCGTGTTGAT CGGCGGTATG
TCTGCGGCGA CGGTAGGAGA TATGCTGGTA TGTACCGGTC CGCCTGACGT CATCGTAAAA
GGTTCGGCCA CAGTGATGAT CGGCGGCAAA CCGGCAGCCC GTATGGGCGA TTCCACCGCA
CATGGCGGTT CTATCGTACT GGGATGTCCC ACTGTGATGA TCGGAGGATA A
 
Protein sequence
MPPAARLTDM HVCPMSTGPV PHVGGPVSGP GVPTVLIGGM SAATVGDMLV CTGPPDVIVK 
GSATVMIGGK PAARMGDSTA HGGSIVLGCP TVMIGG