Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5202 |
Symbol | |
ID | 8361379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6575270 |
End bp | 6577033 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644967350 |
Product | RagB/SusD domain protein |
Protein accession | YP_003124834 |
Protein GI | 256424181 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000106689 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAAGA AATCATTTAA ACTTCATATG CTGGCCTGCG TTGCACTGAC TGTTGCAATG ACGGGTTGTA CAGACCTCAA AGAACAAGTG ATCGATGAGG TACTGGGTTC AAACAATTCA AATCCTGAGA ATGCACTGGC AGCCGCTTAT GGTCAGCTGG GCGATGGTAC TTTCGTGGAC CATGGTAACG TATTTGCTTT GCAGGAATAT TCTACGGATG AGGCTATGCT GCCTACCCGT GGTAGTGACT GGGGTGACGG TGGTGTATGG CGGGCTGTAC ACGAGTTCAC CTGGGCGCCT GACAATTCTG TTGTAACCAA CACCTGGAAC AACCTGAACG CAGGAATAAC CAAGTCCCTG ACAGCGATTA GCGCTATTAA TGGTAAAGCT GATTTTGCCA ACAAAAAGCT GTTCCTGGCA GAAGCGAAAG GTCTGCTGGA CTTCTACACT TTCCATACCC TCGACATGTA CGGACAGGCT CCTTACCGTG ATCCGGCTGA TGTAAATGCA CCGGCAACTG TAAGAAAAGC TGCTGACGCG ATCGATGAAC TGATCAAAGA CGTAGAAGCG ATCCTGCCTG ATCTGGCTAA CCTGAAAGAG CAGAATACAC ACAATGGTCG TTTCACCAAA CAGGCTGCTT ATGCACTGCT GGCTGATATG TACCTGAACC GTGCTGTATT CAAAGACCGT TATGCTGCCA GCTTCAAATT TGATGAAGCA GCCGTAGGCG GTACAGGTAC AGACATGGAT AAAGTAATTG AGTATACTTC AAAACTCATT AACGATCCTG CATTCCACCT GGAAAGCAAT TACTTCAAAA ACTTCGATAT CAGCAACACC GGCGCTCCTG AGCTGATCTT CGTTGTTGTT CAGCAGATCA ATACCCTGCG TAACAGCGAC AACGATTTCG CTTATATGTC AATGGAAAGA AACCAGAAGC CTTCTCCTGC TAACAGGGGA ACAAACGCTT CCTGTATCAC TCCTGAGTTC TACGCCACCT GGGATAACAA CCACGATGAC CCTCGTTTCT CCCGCCACTA TCAGTACGCT GACGGTACCT GGTTCATGAA CGATGGTACT GACGTAAGTG TACCTGCAAC CAGCATCGTT CCTAACAGTG CTTCTCTGCC TTGGTTCCAC TTCAACCGTG GTCTGCTGGC TGGTCAGCAA TATGGTCCGA AACTGCTGTC GAACGGTACT TTCGAAATGA CAGCTGACGG CCGTATTAAA GTAAGCAAAC TGACCTGCGA AAAAAATACG TCTCTGCCAA TGGACTTCAC TCCTGAGCTG AATTTTGATA ATCCGGTTCA GGCAGTGTTT ACACAGGCAC AGATCAACCG TGGTGTACGC GTGTTCAAAT GGGAATTCGA TCCGGAGAGA GATAACAGCT CCAGCAACGT GGATATTCCA TTGTATCGCC TGGGTGGTAT GTATTGTATG AGAGCAGAAG CTTACTTCCG TAAGAATCAG GCTAACCTGG CATTGGCTGA TCTGAACAAA TTACGTACTA CCAGAACCCG TGAAGCACTG TACAACAATG CGCCTGGTAA AGAGTTGACC ACACTGACAG AGCAGGCACT GTATAACGAA ACCGGTTACG AAATGTATTG GGAAATGTAC AGAAGAAAGG CCGCTATCCG TTTCGGTAAA TTCGATCTGG CAGGTACCGC AAAACCAGCA TCTCAGCCAT TCAGAAGGAT CTATCCGATC CCTCAGTCTA CTATGGATGC TACCAAAATT TACACCCAGA ACGATAAATA CTAA
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Protein sequence | MRKKSFKLHM LACVALTVAM TGCTDLKEQV IDEVLGSNNS NPENALAAAY GQLGDGTFVD HGNVFALQEY STDEAMLPTR GSDWGDGGVW RAVHEFTWAP DNSVVTNTWN NLNAGITKSL TAISAINGKA DFANKKLFLA EAKGLLDFYT FHTLDMYGQA PYRDPADVNA PATVRKAADA IDELIKDVEA ILPDLANLKE QNTHNGRFTK QAAYALLADM YLNRAVFKDR YAASFKFDEA AVGGTGTDMD KVIEYTSKLI NDPAFHLESN YFKNFDISNT GAPELIFVVV QQINTLRNSD NDFAYMSMER NQKPSPANRG TNASCITPEF YATWDNNHDD PRFSRHYQYA DGTWFMNDGT DVSVPATSIV PNSASLPWFH FNRGLLAGQQ YGPKLLSNGT FEMTADGRIK VSKLTCEKNT SLPMDFTPEL NFDNPVQAVF TQAQINRGVR VFKWEFDPER DNSSSNVDIP LYRLGGMYCM RAEAYFRKNQ ANLALADLNK LRTTRTREAL YNNAPGKELT TLTEQALYNE TGYEMYWEMY RRKAAIRFGK FDLAGTAKPA SQPFRRIYPI PQSTMDATKI YTQNDKY
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