Gene Cpin_5202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5202 
Symbol 
ID8361379 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6575270 
End bp6577033 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content47% 
IMG OID644967350 
ProductRagB/SusD domain protein 
Protein accessionYP_003124834 
Protein GI256424181 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000106689 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAGA AATCATTTAA ACTTCATATG CTGGCCTGCG TTGCACTGAC TGTTGCAATG 
ACGGGTTGTA CAGACCTCAA AGAACAAGTG ATCGATGAGG TACTGGGTTC AAACAATTCA
AATCCTGAGA ATGCACTGGC AGCCGCTTAT GGTCAGCTGG GCGATGGTAC TTTCGTGGAC
CATGGTAACG TATTTGCTTT GCAGGAATAT TCTACGGATG AGGCTATGCT GCCTACCCGT
GGTAGTGACT GGGGTGACGG TGGTGTATGG CGGGCTGTAC ACGAGTTCAC CTGGGCGCCT
GACAATTCTG TTGTAACCAA CACCTGGAAC AACCTGAACG CAGGAATAAC CAAGTCCCTG
ACAGCGATTA GCGCTATTAA TGGTAAAGCT GATTTTGCCA ACAAAAAGCT GTTCCTGGCA
GAAGCGAAAG GTCTGCTGGA CTTCTACACT TTCCATACCC TCGACATGTA CGGACAGGCT
CCTTACCGTG ATCCGGCTGA TGTAAATGCA CCGGCAACTG TAAGAAAAGC TGCTGACGCG
ATCGATGAAC TGATCAAAGA CGTAGAAGCG ATCCTGCCTG ATCTGGCTAA CCTGAAAGAG
CAGAATACAC ACAATGGTCG TTTCACCAAA CAGGCTGCTT ATGCACTGCT GGCTGATATG
TACCTGAACC GTGCTGTATT CAAAGACCGT TATGCTGCCA GCTTCAAATT TGATGAAGCA
GCCGTAGGCG GTACAGGTAC AGACATGGAT AAAGTAATTG AGTATACTTC AAAACTCATT
AACGATCCTG CATTCCACCT GGAAAGCAAT TACTTCAAAA ACTTCGATAT CAGCAACACC
GGCGCTCCTG AGCTGATCTT CGTTGTTGTT CAGCAGATCA ATACCCTGCG TAACAGCGAC
AACGATTTCG CTTATATGTC AATGGAAAGA AACCAGAAGC CTTCTCCTGC TAACAGGGGA
ACAAACGCTT CCTGTATCAC TCCTGAGTTC TACGCCACCT GGGATAACAA CCACGATGAC
CCTCGTTTCT CCCGCCACTA TCAGTACGCT GACGGTACCT GGTTCATGAA CGATGGTACT
GACGTAAGTG TACCTGCAAC CAGCATCGTT CCTAACAGTG CTTCTCTGCC TTGGTTCCAC
TTCAACCGTG GTCTGCTGGC TGGTCAGCAA TATGGTCCGA AACTGCTGTC GAACGGTACT
TTCGAAATGA CAGCTGACGG CCGTATTAAA GTAAGCAAAC TGACCTGCGA AAAAAATACG
TCTCTGCCAA TGGACTTCAC TCCTGAGCTG AATTTTGATA ATCCGGTTCA GGCAGTGTTT
ACACAGGCAC AGATCAACCG TGGTGTACGC GTGTTCAAAT GGGAATTCGA TCCGGAGAGA
GATAACAGCT CCAGCAACGT GGATATTCCA TTGTATCGCC TGGGTGGTAT GTATTGTATG
AGAGCAGAAG CTTACTTCCG TAAGAATCAG GCTAACCTGG CATTGGCTGA TCTGAACAAA
TTACGTACTA CCAGAACCCG TGAAGCACTG TACAACAATG CGCCTGGTAA AGAGTTGACC
ACACTGACAG AGCAGGCACT GTATAACGAA ACCGGTTACG AAATGTATTG GGAAATGTAC
AGAAGAAAGG CCGCTATCCG TTTCGGTAAA TTCGATCTGG CAGGTACCGC AAAACCAGCA
TCTCAGCCAT TCAGAAGGAT CTATCCGATC CCTCAGTCTA CTATGGATGC TACCAAAATT
TACACCCAGA ACGATAAATA CTAA
 
Protein sequence
MRKKSFKLHM LACVALTVAM TGCTDLKEQV IDEVLGSNNS NPENALAAAY GQLGDGTFVD 
HGNVFALQEY STDEAMLPTR GSDWGDGGVW RAVHEFTWAP DNSVVTNTWN NLNAGITKSL
TAISAINGKA DFANKKLFLA EAKGLLDFYT FHTLDMYGQA PYRDPADVNA PATVRKAADA
IDELIKDVEA ILPDLANLKE QNTHNGRFTK QAAYALLADM YLNRAVFKDR YAASFKFDEA
AVGGTGTDMD KVIEYTSKLI NDPAFHLESN YFKNFDISNT GAPELIFVVV QQINTLRNSD
NDFAYMSMER NQKPSPANRG TNASCITPEF YATWDNNHDD PRFSRHYQYA DGTWFMNDGT
DVSVPATSIV PNSASLPWFH FNRGLLAGQQ YGPKLLSNGT FEMTADGRIK VSKLTCEKNT
SLPMDFTPEL NFDNPVQAVF TQAQINRGVR VFKWEFDPER DNSSSNVDIP LYRLGGMYCM
RAEAYFRKNQ ANLALADLNK LRTTRTREAL YNNAPGKELT TLTEQALYNE TGYEMYWEMY
RRKAAIRFGK FDLAGTAKPA SQPFRRIYPI PQSTMDATKI YTQNDKY