| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5169 |
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| Symbol | |
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| ID | 8361346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6449008 |
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| End bp | 6449892 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644967317 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003124801 |
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| Protein GI | 256424148 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.193202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0119355 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTCAA GAAGATCATT TCTCAAACAG GCGGGTCTCG CTACTGCAAG CGTTTTGTTG
TTACCTTCAC TGGCCAGCTT TGCCGGTTCA GGTAAGGTAA AGAAGGTGGG TATCCAACTG
TATACGCTGC GTGATTTGCT GCCAAAGGAC GTAAAAGGTG TTATCGGACA GATCGCAGCT
GCCGGTTATA AAGAGGTTGA AACTTATGGT TATAACCCAC AATCCGGATT CTGGGGACTG
TCTCCTAAGG AGTTCAAAGC GCTGCTGAAG GCAAACGGAC TGACCGCCGT AAGCGGCCAC
GTAAGTATCG ACAGGTTCAT TAAAGACGGT GATACCGCTG ATCTGAAAGC CAATATTGAG
GCGTTAAAGA TCATCGGCGC TGAGTACCTG GTAGTACCTT GGCTGGGAGA AGAGCTGCGT
AGCAGTGCTG ACGACTATAA AAAGATAGCT GCAAAGCTCA ATCAGGCGGC AGAACTGTGT
AAGGCTTCCG GTCTGAAACT GGGATACCAC AACCATGATT TTGAATTCAC GAAGTATGGC
GCTAAAACCG GTTACGATAT CCTGTTGGAG GAAACATCTC CAAAGCTGGT GAAATTCGAA
CTGGACCTTT ACTGGGCAGT ACATTCCGGC AATGACCCTG TAGCTTTATT CGAAAAACAT
CCGGGCAGAT TCCCGATGTG GCACGTAAAG GATATGGACA AGGCAAACCG CGACCAGAAT
ACCGAAGTAG GTAAAGGTAG CATTGATTAC AAACGGATCT TTGCCAAAGC ATCCACTTCC
GGTATGAAGC ATTTCTTCGT TGAACACGAG AATAACTACA AACCGGACGA AATAGGATCT
ATTAAGGAAA GCTTCCAGTA TATCCAGAAG AATTTGTTGT CTTAG
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| Protein sequence | MHSRRSFLKQ AGLATASVLL LPSLASFAGS GKVKKVGIQL YTLRDLLPKD VKGVIGQIAA
AGYKEVETYG YNPQSGFWGL SPKEFKALLK ANGLTAVSGH VSIDRFIKDG DTADLKANIE
ALKIIGAEYL VVPWLGEELR SSADDYKKIA AKLNQAAELC KASGLKLGYH NHDFEFTKYG
AKTGYDILLE ETSPKLVKFE LDLYWAVHSG NDPVALFEKH PGRFPMWHVK DMDKANRDQN
TEVGKGSIDY KRIFAKASTS GMKHFFVEHE NNYKPDEIGS IKESFQYIQK NLLS
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