| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5111 |
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| Symbol | |
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| ID | 8361287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6375340 |
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| End bp | 6375984 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644967259 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003124744 |
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| Protein GI | 256424091 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.679921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.333552 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGTGGCTTA CTCCTTTACC ATTATTTTCA TTGTCAGCGC TTAATGTTCA TATACGTATA
ACGGAAGAAG AGGAAAGACA TCTACTCAGT AATGTTGCGA CAGGTGACTG GCAGGCATTT
ACGCGCCTTT ATGAAGCCTA TTCCCCTCTT ATTATACATT ATCTGCAGGT TTATCTTACT
GACAAACATG ACGTAGAGGA AATCGGCCAG GAAGTATTTC TGAAAGTCTG GAAAAAGCGG
GAAATACTTG TTACGGTACG TTCTTTTAAG AACTATGTAT TTATCATGGC CAGGAATGCG
TTGAACGACT TCCTGAAAGC CCGGCAGGCA TTACTTCAGA AGCAGGCCGG TTACAGCAAA
GACTATGTTT TACCACACTA TAGTGCGGAC GATAAACTGA TCACGGATCA GTATGAATCC
ATTGCCCGTT CGGGACTGGA TATACTGTCG GAAAAGCAGC GTCGTATTTT CCTGCTGCGT
ACACGCGATG AAATGACCAT TCAGGAGATA GCGGATGCAG AGGGCATGTC CGTTGGCGGC
GTTCACAAGT CATTACAGCA GTCTACCCAA CAGCTCAAAG ACTATCTGGC CCGCAATGGC
ATTAGTTTTA CCCTTCTTCT ATTGATACTT TTCTTTCAGC CCTGA
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| Protein sequence | MWLTPLPLFS LSALNVHIRI TEEEERHLLS NVATGDWQAF TRLYEAYSPL IIHYLQVYLT
DKHDVEEIGQ EVFLKVWKKR EILVTVRSFK NYVFIMARNA LNDFLKARQA LLQKQAGYSK
DYVLPHYSAD DKLITDQYES IARSGLDILS EKQRRIFLLR TRDEMTIQEI ADAEGMSVGG
VHKSLQQSTQ QLKDYLARNG ISFTLLLLIL FFQP
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