Gene Cpin_5109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5109 
Symbol 
ID8361285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp6370913 
End bp6372142 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content50% 
IMG OID644967257 
Productglycoside hydrolase family 16 
Protein accessionYP_003124742 
Protein GI256424089 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2273] Beta-glucanase/Beta-glucan synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0369397 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.380992 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGGC AAACCCTCTC CACGTTGCTT AGCGTACTGC TGTTGTCAGG AGCAGTAACA 
TCCTGTAAAA AAGAAAACAA GGCAGACCAG ACGCCTAAAT TGTCAGCTGA TGACAACACC
CTTGGCGCTG TATCGGCTGC CGCCAGATCT TACAACCTGA TATGGTCTGA TGAATTTGAC
GGTACCAGCC TGAATACTTC CAAATGGGGG TATGAAAATG GTAACCTCGG TGTCAACAAT
GAAAAGCAGT TTTACCAGAC GCAGAACGTT GCTGTCAGCA ATGGTAACCT GGTCATCACT
GCCCGTAAAG AAAGCGTTGC CGGACAACCC TACACTTCCG GCCGTATTAA CAGTAACGGT
AAATTCTCAA CCAGGTATGG TCGTATTGAA GCCCGTATCA AGCTCCCTGC AATACAGGGC
TTATGGCCTG CATTCTGGAT GCTGGGTAAC AGTATCAGCA CCGGCGCCGG CTGGCCTGCC
TGTGGTGAAA TTGACATCAT GGAGCATGTA AACACCGGTA ATACCGTGCT GGGTACGATC
CACTGGTTTA ACACCGTTTA TTCCTATTAT GGTGGTAACA CGAACACCAC ACCGACTGAC
TATCACGTGT ACGCGGTAGA TTGGGATGCA TCCGCTATCC GCTGGTATGT GGATGGTGTA
CAGTTTCATG AAGCAAACAT CCTGAACAAC ATCAACGGTA CAGAAGAATT CCATGCGCCT
TTCTTTATCC TGCTGAACGT TGCCGTAGGG GGTAACCTGC CAGGTAACAA TATCAACGAT
GGCGGACTGC CTGCTTCCAT GCTGGTGGAC TACGTAAGAG TGTACAGCAT CACCGATACA
CCTGGTGGTG GTACTGCTCC GATCGGTTCT ACTATCACGA TCAAAGGCAG CAACGGTCTG
TTTGCCAGCG GTGAAAATGG TGCACAGGCC ATGACCTGCA ACCGTCCGAC CGCACAGGCA
TGGGAACAGT TCACCGTAGT AGATGCCGGC GGTGGTAAAG TCGCACTGCG TAGCCAGGGC
ATGTATGTTT CCTCCGAAAA CGGCGCTCAG GCAATGACTT GTAGCCGTCC GACCATCCAG
GATTGGGAAA AATTTAATTG GATTGATAAT GGCGATGGTA CTTTCTCTCT CCGTGGCAAT
AATGGATCAT ATGTCTCCAG CGAAAACGGT ACCCAGGCAA TGACCTGTAA CCGTCCGACG
ATCCAGGGCT GGGAGAAATT CACCCGCTAG
 
Protein sequence
MKRQTLSTLL SVLLLSGAVT SCKKENKADQ TPKLSADDNT LGAVSAAARS YNLIWSDEFD 
GTSLNTSKWG YENGNLGVNN EKQFYQTQNV AVSNGNLVIT ARKESVAGQP YTSGRINSNG
KFSTRYGRIE ARIKLPAIQG LWPAFWMLGN SISTGAGWPA CGEIDIMEHV NTGNTVLGTI
HWFNTVYSYY GGNTNTTPTD YHVYAVDWDA SAIRWYVDGV QFHEANILNN INGTEEFHAP
FFILLNVAVG GNLPGNNIND GGLPASMLVD YVRVYSITDT PGGGTAPIGS TITIKGSNGL
FASGENGAQA MTCNRPTAQA WEQFTVVDAG GGKVALRSQG MYVSSENGAQ AMTCSRPTIQ
DWEKFNWIDN GDGTFSLRGN NGSYVSSENG TQAMTCNRPT IQGWEKFTR