| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4970 |
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| Symbol | |
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| ID | 8361146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6216334 |
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| End bp | 6217488 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644967119 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003124604 |
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| Protein GI | 256423951 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00811703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.288098 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGGA GAAGCGCACT ACGTAAACGA CTGCAGCATA CAGAACGGGA GCTACGGGCA
GCCAGGCTGG AATTAAAACA AACCCGGGAC AACTATCAGA ACATGGTAGA GGAAGTGAAA
GACTATGCCA TATTGTTAAT GGACATAGAC GGCAACATCC TCAACTGGAA TAAAGGCGCG
GAGAAGATTA AAGGATATAC AGCCAGCGAA ATCATCGGAA AAAATTTCCG CTTATTTTAT
ACTGCCCGGG ACAGAGCAAG TCTGGTACCG GAACAACTCC TGCATTCAGC AGTAAAAGAT
GGCCGCGTAC AACATGAAGG ATGGCGGGTA CGGAAAGACG GAGCGCTCTT CTGGAGCAAT
GTGACCATCA CTGCCATACA TAACCGCGAT GGACAGGTTA CCGGCTTTCT GAAAATAACC
CACGACCTCA CCGACAAGCG GCTGGCAGAA GAAAACAGCC GCCTCTACAC AGAGAAACTG
GAGATAAAGA ACAGCGAACT TGAACAATTC ACCTATATTG CCTCGCATGA CCTGCAGGAA
CCCTTACGTT CTATCAGCAG CCTGGCAGAA ATGATCTCAG AACAGTATCA CGGCAAACTG
GACGAAACAG CAGATACCTA CCTGCATTTT ATATTACAGT CAGTAAACCG CATGAGTCAG
CTGATCAAAG GATTGCTCGA CTATTCCCGC CTGGGGAAAG CAAAACTGGA CCCCCAGGTA
GATTGTAATG TGATCATGGA AACAGTGCTT GCGGACCTGC AATCAGCAAT CAAAGACAGT
AATGCGATCA TTAACGTAAA ACAGTTACCT GTACTGAGTG CTTACCCGAT GGAACTGAAA
CTCCTGTTTC AAAACCTTAT CAGTAATGCC ATCAAATTCA GAAAAAAGGA TCAACAACTG
TATGTAAACA TTTCAGCCTG CCTGACAGAT GATGGCTGGA TCTTCCAATT TCAGGACAAC
GGTATCGGCA TAGATCAGCG ATTCAGTGAT AAGATCTTCG AAATTTTTCA AAGGCTACAC
AGTAAGTCAG CTTATGAAGG GACCGGCATT GGTCTCGCAC ACTGTAAAAA GATTGTAGCC
ATGCACAATG GCAGGATCTG GGTCGACTCT ATTCCTGGTG AAGGCAGCAA GTTCTATTTT
ATTATTTCGG TATAA
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| Protein sequence | MNRRSALRKR LQHTERELRA ARLELKQTRD NYQNMVEEVK DYAILLMDID GNILNWNKGA
EKIKGYTASE IIGKNFRLFY TARDRASLVP EQLLHSAVKD GRVQHEGWRV RKDGALFWSN
VTITAIHNRD GQVTGFLKIT HDLTDKRLAE ENSRLYTEKL EIKNSELEQF TYIASHDLQE
PLRSISSLAE MISEQYHGKL DETADTYLHF ILQSVNRMSQ LIKGLLDYSR LGKAKLDPQV
DCNVIMETVL ADLQSAIKDS NAIINVKQLP VLSAYPMELK LLFQNLISNA IKFRKKDQQL
YVNISACLTD DGWIFQFQDN GIGIDQRFSD KIFEIFQRLH SKSAYEGTGI GLAHCKKIVA
MHNGRIWVDS IPGEGSKFYF IISV
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