Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4967 |
Symbol | |
ID | 8361143 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 6213710 |
End bp | 6214267 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644967116 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003124601 |
Protein GI | 256423948 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.110994 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.179343 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGATA CCAAAGAGAA AATTATTGCG CTGGCAGACC AGCTGATCAG GACCAAAGGA TACAATGCCT TTAGTTATAA AGATATATCT GATCCGCTGG AGATAAAAAA TGCGGCTATT CACTATCATT TTCCCACCAA AACCGACCTG GGCATAGCGG TGGTAGACTT TGAAACTGAA CGCTTTAAGG AGCATACCGC CAAATGGTCC GGCATGTCGG AAGATAAACA GCTGAAACAG CTGTTTGAGA CCTTTAACAG GAAACATAAA GAGGGGCTGG TCTGCCTGAT GGGCACCCTG TCCCCTGACT ATAAAACCTT CCCCGAGTCC TTACAGGAAA AGGTCACAGG AATGTCAACG GCTTTTGCCA ACTGGACTTC TCAATGTCTT GAAAACGGAC GTAAAAAAGG AATCTTTGCG TTTGATGGCG ATGCTGACGA CAGGGCCTTA CTGGTACTTA GTAATCTACT GGCTTCGCTG CTGATGAGCA GGGTCATGGG ACCAAAAACA TATAGTAAAA TAAGTGGTCA GTTATATAAA GACCTCTTGA AAAAGTAA
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Protein sequence | MQDTKEKIIA LADQLIRTKG YNAFSYKDIS DPLEIKNAAI HYHFPTKTDL GIAVVDFETE RFKEHTAKWS GMSEDKQLKQ LFETFNRKHK EGLVCLMGTL SPDYKTFPES LQEKVTGMST AFANWTSQCL ENGRKKGIFA FDGDADDRAL LVLSNLLASL LMSRVMGPKT YSKISGQLYK DLLKK
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