| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4950 |
|---|
| Symbol | |
|---|
| ID | 8361126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 6187173 |
|---|
| End bp | 6189419 |
|---|
| Gene Length | 2247 bp |
|---|
| Protein Length | 748 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967099 |
|---|
| Product | copper-translocating P-type ATPase |
|---|
| Protein accession | YP_003124584 |
|---|
| Protein GI | 256423931 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.113213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACAA CAACCGGACA TATAACAAAA GAAACGTTTC CTGTGCTGGA AATGAGCTGT
GCAGCCTGCG CCGTCAGCGT CGCGTCCATG CTGCAATCTG TGCCAGGTGT GTCAGATGCA
TCGGTGAACT ATGCCGATCA GACAGCCCGT GTAACTTATG ATAGCGACCG CGTTACGCCT
GAAGGATTAC GCAATGTGAT CCGTGGTATT GGCTATGATC TTGTCATCGA TACACATAAT
CGTGAGCAGG TACAGGAACA GGCGCAGCTG GATCATTATA AATCACTGAA AAAGAGAACA
TTTGCCTCAC TGATATTGTC AGCGCCGGTC GTGCTGATCG GGATGTTCCT GATGGATATG
CCGTATGCCA ACTGGATCAT GCTTGTATTA TCGACACCTG TTATTTTCTA TCTGGGCCGG
CAGTTCTTTC TGAATGCCTG GAAACAGGCC CGTCACGGCA AAGCGAACAT GGATACACTG
GTGGCGCTGA GTACCGGTAT TGCCTGGTTA TTCAGCGTGT TTAATACGGT TTATCCTGAA
TACTGGCATG CCCGTGGCTT ACATGCGCAT GTGTATTTTG AAGCAGCGGC AGTCGTGGTG
GCATTTATAT CCTTAGGGCG ATTGCTGGAA GAAAAGGCAA AATCAAATAC CTCTGCCGCA
TTAAAAAAGC TGATGGGATT ACAGCCTGCT ACCGCATTCA TTGTGATGAA CAATGGTGCT
GAAACAAAAG AAATTCCTTT AAGCGAAGTG CAGACCGGTA ATCTGTTGCT GGTGAAACCA
GGTGCACGGA TACCTGTAGA TGGCGAGGTA CAGAGCGGCA GTTCCTGGGT AGATGAAAGT
ATGATTACCG GGGAACCGGT ACCTGTATTG AAAGAGAAAG GTACAGCGGT ATTTGCAGGA
ACGATCAATC AGCAGGGAAG TTTTCATTTT ACAGCAGAAA AAGTCGGCGC TGATACGGTA
TTGGCACAGA TTATCCGGAT GGTGAGAGAA GCGCAGGGCA GTAAGGCGCC TGTGCAGCAG
CTGGTTGATA AAATTGCGGG CATTTTTGTA CCGGTAGTGA TTGGCATTGC TATACTGACT
TTCGGGATCT GGATGCTTGC AGGAGGGGAG AATGCATTTA CACATGGTTT GCTTTCAGCA
GTTACTGTAC TGGTAATTGC TTGTCCCTGT GCCTTAGGAC TGGCAACACC GACCGCGATT
ATGGTGGGTG TAGGAAAAGG TGCAGAAAAT AACATGCTGA TCAGAGATGC GGAAAGTCTG
GAGCTGGCGC ATCAGGTGAA TGCCCTGGTA TTGGATAAAA CAGGTACTAT TACAGAAGGA
AAGCCGGTGG TGACAGACAG CTACTGGTTG TCTGTTTCGA AGGAGCAACA GGAACTGCAA
CGCATACTGC TCAGTATAGA ACAACAATCT GAACATCCGC TGGCAGCTGC TATTGTGAGA
GCGTTGGAGG ATAAGGGTGT AGTTGCAATA CCTGGCGCAT CATTTACCGC AGTAGAAAGT
ATCACCGGAA AAGGCATACG GGCGCGTTAC CAGGGAGTTA AATATCTGGC AGGAAACCTT
GCATTACTGG CAGAAAGTGG TATCAGACCA GATGATACTT TGTCGGAAAA GATTGCCGGC
TGGCAATCTG CGGCAAGAAC GGTGATCGCC TTTGCAGGAG ATGAAAAGAT ATTTGGCATT
ATTGCTATTG AAGATAAAGT AAAAGCGACT TCGGCTGTGG CGGTGGAGAA TCTGCAGAAG
CGTGGTATTA TAGTGTATAT GCTTACGGGT GATAATGAGC ATACGGCCGC AGCGGTAGCC
GGACAGGTCG GTATTACGCA TTATAAGGCA GGTGTGTTGC CCGCAGAGAA AGCTGCATTT
GTGCAGTCTT TACAGGAACA GGGGAAAGTG GTGGCGATGG CCGGAGATGG TATTAACGAC
AGTCATGCAT TGGCACAGGC GGACGTCAGT ATTGCGATGG GTAAGGGAAC GGATATTGCT
ATGGATGTGG CGAAAATGAC CCTGATCACT TCCGATCTGG ATGTCATTCC GAAGGCACTG
CAATTGTCCC GCAAAACAGT CCGTACAATC CGCCAGAATC TTTTCTGGGC TTTTATCTAT
AACATTATCG GTATTCCGTT GGCAGCAGGT GTGTTATTTC CGGTGAACGG GTTCCTGCTC
AATCCGATGA TAGCGGGCGC TGCGATGGCG CTGAGTTCTG TATCAGTGGT AAGTAATAGT
CTGCGATTAA AATGGTCAAA AATTTAA
|
|---|
| Protein sequence | MATTTGHITK ETFPVLEMSC AACAVSVASM LQSVPGVSDA SVNYADQTAR VTYDSDRVTP
EGLRNVIRGI GYDLVIDTHN REQVQEQAQL DHYKSLKKRT FASLILSAPV VLIGMFLMDM
PYANWIMLVL STPVIFYLGR QFFLNAWKQA RHGKANMDTL VALSTGIAWL FSVFNTVYPE
YWHARGLHAH VYFEAAAVVV AFISLGRLLE EKAKSNTSAA LKKLMGLQPA TAFIVMNNGA
ETKEIPLSEV QTGNLLLVKP GARIPVDGEV QSGSSWVDES MITGEPVPVL KEKGTAVFAG
TINQQGSFHF TAEKVGADTV LAQIIRMVRE AQGSKAPVQQ LVDKIAGIFV PVVIGIAILT
FGIWMLAGGE NAFTHGLLSA VTVLVIACPC ALGLATPTAI MVGVGKGAEN NMLIRDAESL
ELAHQVNALV LDKTGTITEG KPVVTDSYWL SVSKEQQELQ RILLSIEQQS EHPLAAAIVR
ALEDKGVVAI PGASFTAVES ITGKGIRARY QGVKYLAGNL ALLAESGIRP DDTLSEKIAG
WQSAARTVIA FAGDEKIFGI IAIEDKVKAT SAVAVENLQK RGIIVYMLTG DNEHTAAAVA
GQVGITHYKA GVLPAEKAAF VQSLQEQGKV VAMAGDGIND SHALAQADVS IAMGKGTDIA
MDVAKMTLIT SDLDVIPKAL QLSRKTVRTI RQNLFWAFIY NIIGIPLAAG VLFPVNGFLL
NPMIAGAAMA LSSVSVVSNS LRLKWSKI
|
|---|
| |