Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4942 |
Symbol | |
ID | 8361118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6179607 |
End bp | 6180956 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644967091 |
Product | outer membrane efflux protein |
Protein accession | YP_003124576 |
Protein GI | 256423923 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.755187 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.782486 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAGCA ATTATATACA TCGGTTCCTC TTTTGGATAT TGATTTTCAG AATAGTTCCT ACATATGCAC AGGACACCGC CGCTTCGCAG GTGCAATTAC CTGAGAAATG GGACTTGCAG GCTTGTCTGG ACTATGCCAA AACCAATAAC ATTACACTAA ACAGTTACCG GTTAAATCGC CTTAGCAGTC AGCAGGATCT GGAGCTGTCG AAAGCCGCTG TGCTACCCAA CCTTTCTGCC AGCGCATCCC CTTCATTGAT ACAGAGTAAG ACCATCGATC CGGCCACCGG TGATTTGAAA TCGGGCGTAC GGTTTTCTGG GAGTAGTTCG CTGAATTCAT CAGTGACATT GTATAATGGC GGATACCTGA AGACGGATAT TCAACAGAAA GATTTGCTGG TGAAGATTGC GGGACTGGAT CTTGCGACGG TTGAAAATGA TATCACGCTG CAGATCACGC AGGCTTATCT TAATATTCTG CTGGCTAAAG AAAATATCGT GTATGTCAGG GACGTAGTGG CTACGTCCAC TGCGCAGGTG CAGCAACAGC AACAGTTTTA TGATGTAGGT GCGGTCGCGT TGAAAGATCT TGTTCAGTTA CAGGCGCAGC TGGCCAATGA TAAATATACG CTTGTCACAG CCGAAAATAC ACACCGGCAA AACTTACTGA CGCTGAAACA ATTACTGCAA TTGCCGACGG TCACTCCCTT TGAGATCGTT GAGCCGGATA CACTGATGGG TAACGCTCTA CTGACGCCAT TACTGGATGC ACAGCAGACG GCATTGGCTA CGCGGCCTGA GGTGAAAAGC AGTGAACTGG GTGTACAGGT AGCCTCACTG GACGTCAGGA AAGCCAGGGC GGGATATCTG CCGGCATTGA CTGCTGGTGC AGGATTAGGT ACCAGTTATG CGCATAATGA TAATTACTCT TTTTTACGAC AGCTGGATAA CAATTTTTAT CAGCAGGTTG GGCTGACTTT ATCGGTACCC ATTTTCAGCC GTCGCGCGAA CAGGGTGAAT GAGGAAAAGG CGAAAATAGG CGTAGGTCAG GCCGAGCTGA CGTTACAGAA TACACGTACC AATCTGTCGC AGGAAGTGGA GCGTGCATAC ATTAATGTGC AGAATGCGCA AGGGCAATAT GACGCAGCCG TTGAACAGTT GCGTTATACC CAGGAAGCCT ACCGGATTGC CAATGAACAA CTGAAAATCG GTGCAGCGAA TACCGTAGAA GTGTTACAAC AGAAGAATCT CTATGTCCAG TCCATGCAGT CATACATTCA GGCCAAATAC GCAGCAGCGC TGTATATCAG GATATATGAT TTCTACAGGG GCGTGCCAGT CCATTTATAG
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Protein sequence | MFSNYIHRFL FWILIFRIVP TYAQDTAASQ VQLPEKWDLQ ACLDYAKTNN ITLNSYRLNR LSSQQDLELS KAAVLPNLSA SASPSLIQSK TIDPATGDLK SGVRFSGSSS LNSSVTLYNG GYLKTDIQQK DLLVKIAGLD LATVENDITL QITQAYLNIL LAKENIVYVR DVVATSTAQV QQQQQFYDVG AVALKDLVQL QAQLANDKYT LVTAENTHRQ NLLTLKQLLQ LPTVTPFEIV EPDTLMGNAL LTPLLDAQQT ALATRPEVKS SELGVQVASL DVRKARAGYL PALTAGAGLG TSYAHNDNYS FLRQLDNNFY QQVGLTLSVP IFSRRANRVN EEKAKIGVGQ AELTLQNTRT NLSQEVERAY INVQNAQGQY DAAVEQLRYT QEAYRIANEQ LKIGAANTVE VLQQKNLYVQ SMQSYIQAKY AAALYIRIYD FYRGVPVHL
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