Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4843 |
Symbol | |
ID | 8361019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6049805 |
End bp | 6052582 |
Gene Length | 2778 bp |
Protein Length | 925 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644966993 |
Product | mannonate dehydratase |
Protein accession | YP_003124478 |
Protein GI | 256423825 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1312] D-mannonate dehydratase |
TIGRFAM ID | [TIGR00695] mannonate dehydratase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0781213 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00115783 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCAGATGG AACAAACAAT GCGTTGGTTT GGTCCCGGGG ATACCGTGCC CCTGCGATAT ATCAGACAGG CCGGATGTAC CGGTGCCGTG ACAGCTTTAC ATCATATTAC GCCGGGTGAG GTATGGCCGG CAGCGGCTAT TATGGAACGC CGTCAGCTGA TTGAAGCTGC AGGAATGACC TGGACTGTGG TGGAAAGTTT ACCGGTGAGT GAAGATATTA AACGACAGTC GGGCGATTAT CTCCGGCATA TAGAAAATTT CAAGGAAAGT CTGCGGAATC TGGCTGCGTG TGGTATAAAG GTGATTACTT ACAATTTTAT GCCTGTACTG GATTGGGTGC GGACGCATAC GGACTATGCG ATGGAAGACG GGAGTCGTGC CTTGTATTTT GAGCGTGCGG CATTTGTTGC TTTTGATCTG TATCAATTAC AGCGCCCGGA TGCAGCGTTG GATTATGATG CGGTGACGAT CAAAAAGGCC CGTCAGAGAT ATGAGGCCAT GTCCGTAGAA GAACGGGAAA GGATTTACAG GAGTGCTTTG CTGGGATTAC CGGGATCGAA TGGACAATTT ACGGCGACGG AGGTGTTACA GGCATTGGAG ACCTATAAAG ACATAGATGC AGATAAGTTA CGAACACACC TTTGTGATTT TTTGAGGGCG GTTACACCTG TTGCTGAGGC ATCGGGTGTA CGGCTGGCAA TTCATCCGGA TGATCCGCCT TATCCGGTAT TGGGTTTGCC CAGGGTGGTC AGTACAGAAG CGGATATACA GTATTTGTTT GACACGGTAC CATCAGTCGC AAACGGCCTG TGTTTTTGCA CTGGTTCATT GGGCGCGAGA GCAGATAATG ATTTGCCGGG TATGATACAG CGATGGGGCG ATCGTATCTG GTTCCTGCAT CTGCGGAATA CCAAAAGAGA TGCGGAAGGC AATTTTTATG AAGCAGCTCA TCTTGCAGGC GATGCAGATA TGTATGTGAT TGTAAGTGAA ATTGCGTTGC TGATGCAAAA GCGGAATGCA TCGATTCCCA TGCGTCCTGA TCATGGGCAT CAGATGCTGG ATGATCAGGA CAAAACGACT TATCCGGGAT ATAGTGCGAT CGGCAGACTA AAAGGGCTTG CTGAATTAAG GGGTCTGGAG ACCGGCATAT TGCGCCATCT GTTCACGTTA TTGGTTCTAT TACTGACGGC TTTTTCTATG CCAGTCTTCG CACAACAGAA TGCAGGTCAT CCGAGGCTAC AGCAACAGGG CAGCACGGTA CAGCTGATGG TAAAGGGCGC TCCTTTTCTC ATACGCGGAG GAGAGCTGGG TAATTCAAGC GCTTCCAGTA TCTCCTATAT GGAGGGGCTT TGGAATACCC TGGAACAAAT GCAGCTGAAT ACCGTGCTGA CACCTGTTTA CTGGGAACTG ACGGAACCTG TGGAAGGGCA GTTTGATTTC GCTGTAGTAG ACAGCATTAT TTATCAGGCG CGTAGTCATC ACATGCACCT GATCCTCTTG TGGTTTGGTA CCTGGAAGAA CAGTATGAGT TGTTATGTTC CGTCCTGGGT GAAGAAAGAT CCGCAGCGCT TCCCCAAGGC GCTAAAGAGC GATGGGAGCG GACAGGAGAT CTTATCGGCT TTTAGTCCGC AGAACCTCGC AGCAGATGTA AAAGCATTCC GTGCGTTGAT GCAGCACATT CACGAAACAG ATGCAGGTTA CAGTACCGTC ATTATGGTGC AGGTAGAGAA TGAAATCGGC TTTCTGCCGG AGGCGAGAGA ACATACACCT GCTGCAGATG CAGCTTATAA AGGGTTAGTG CCTGCTGCGC TGATGGATTA TCTGCAAAAA CATAAAAACG AGTTAGTCCC GGAACTGAAA GCACATTGGT CGCGAAACGG CTATCTGACA AAGGGCAGCT GGGAGCAGGT ATTCGGGAAG AGTGTGGCTA CCGAGGAACT TTTTCAGGCA TGGCATTATG CGCAATATAC CAATACGATA GCCCGTGAAG GCAAGTCGGC ATATGCACTG CCGATGTTTG TCAATGCGGC GCTGAATCAC CGGAATGTTG CACCCGGTCA GTATCCCAGC GGAGGCCCCT TACCCCATCT GATAGATATA TGGCAGGCCG GAGCGCCGGC AATAGATATC TTATCCCCTG ATTTTTATAA TCCCCGGTTT AAATATTACA ACGACCTTTA TGTGAGAAGG AACAATCCTC TGTTCATTCC GGAGATACGT TTTGACGCAT CAGATGGGGC GAAGGCATTG TATGCGGTCG GACATTACCA GGCGATGGGT TTCTCCCCGT TTTCAATAGA ATCTACCCTT CAACCAAAAG AAGAAACGAT CGCAAAGAGC TACGCACTGT TGCAGCAATT ATGGCCGGTG ATTGCAAAGT GTCAGGGCTC GGGTAAGATG GAAGGTGTTT TACTGGATAC AACAGATCTG CGTCAGGCGA TCGTTTCCGG TCAGTATCTC CTTTCGGTGG CGCATGATGG TACACTGGGC TGGAAGGGTA TTCCCAAGGA GCAATGGCCG GAGGGCGGTG GTATTATTAT CCGTACCGGA GAAGATGAAT TCATCATAGC AGGTACCGGT ATTGTCATTA CATTTGGTAC CAGTGATAAA ATAGCGCCTG TGGTGGGTAT CCTGGAGGCA ACAGAAGGTG TTTATACAGA TGGGAAATGG GTACCCGGCA GAAGGCTGAA TGGCGATCAG ACCCACCAGG GGCGGCATAT CCGTATTCCT TTGGGAGAAT GGGGCATTCA ACGGATAAAG CTATATCGTT ATCAATAA
|
Protein sequence | MQMEQTMRWF GPGDTVPLRY IRQAGCTGAV TALHHITPGE VWPAAAIMER RQLIEAAGMT WTVVESLPVS EDIKRQSGDY LRHIENFKES LRNLAACGIK VITYNFMPVL DWVRTHTDYA MEDGSRALYF ERAAFVAFDL YQLQRPDAAL DYDAVTIKKA RQRYEAMSVE ERERIYRSAL LGLPGSNGQF TATEVLQALE TYKDIDADKL RTHLCDFLRA VTPVAEASGV RLAIHPDDPP YPVLGLPRVV STEADIQYLF DTVPSVANGL CFCTGSLGAR ADNDLPGMIQ RWGDRIWFLH LRNTKRDAEG NFYEAAHLAG DADMYVIVSE IALLMQKRNA SIPMRPDHGH QMLDDQDKTT YPGYSAIGRL KGLAELRGLE TGILRHLFTL LVLLLTAFSM PVFAQQNAGH PRLQQQGSTV QLMVKGAPFL IRGGELGNSS ASSISYMEGL WNTLEQMQLN TVLTPVYWEL TEPVEGQFDF AVVDSIIYQA RSHHMHLILL WFGTWKNSMS CYVPSWVKKD PQRFPKALKS DGSGQEILSA FSPQNLAADV KAFRALMQHI HETDAGYSTV IMVQVENEIG FLPEAREHTP AADAAYKGLV PAALMDYLQK HKNELVPELK AHWSRNGYLT KGSWEQVFGK SVATEELFQA WHYAQYTNTI AREGKSAYAL PMFVNAALNH RNVAPGQYPS GGPLPHLIDI WQAGAPAIDI LSPDFYNPRF KYYNDLYVRR NNPLFIPEIR FDASDGAKAL YAVGHYQAMG FSPFSIESTL QPKEETIAKS YALLQQLWPV IAKCQGSGKM EGVLLDTTDL RQAIVSGQYL LSVAHDGTLG WKGIPKEQWP EGGGIIIRTG EDEFIIAGTG IVITFGTSDK IAPVVGILEA TEGVYTDGKW VPGRRLNGDQ THQGRHIRIP LGEWGIQRIK LYRYQ
|
| |