| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4826 |
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| Symbol | |
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| ID | 8361002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6030623 |
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| End bp | 6031240 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966976 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003124461 |
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| Protein GI | 256423808 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.123307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000000281561 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGACAAG ATTATTCCAC GTTTACCGAT GAAGAGGTGT TCCTGCTCGT GAAGAAGGGG
GACGACAAAG CATTCGAAGA AATTTTCAGA CGTTTCTGGC AGGAGTTGCT GGATGCGGCC
TATCGCCGCG TAAAAGTACA GGAAACTGCC ATGGAACTGG TTCAAAGCCT GCTTGTGAAC
CTGTATCTGA AAAGGGAAAC GATTGAACTC CGGACCTCTC TCCGCAATTA TCTGCATATC
TCATTAAAAA ATAAAGTACT GAACGCAGTA CGGGCTGAAG TTGTGCGTAA CACTTATCAG
CAGCATATGC TGGCAGACAC TGGCCTGTAT CAGGCTGATG CCGCCACCAA TCTGCAACTG
AAAGAGTTAC AGGAGCAGAT CGATGCTTCC TGTGCGGGGA TGCCGGAAAA ATGCCGGGAG
GTCTTTTTCC TGAGCCGGAA GGAGCACCTG TCGTATCAGC ATATAGCACA AAGGCTCGGC
ATATCGGTGA ACACTGTGGA GAAACACATG GTGAAAGCAT TGAAAATACT GCGTTCACGC
CTGAAAGAAT ATAACTTTAC ACTGTTCTGG CTGATGCTGT TGGTAGTGCT TGGATGGGAA
ATTTTCAGCA AATTTTAA
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| Protein sequence | MRQDYSTFTD EEVFLLVKKG DDKAFEEIFR RFWQELLDAA YRRVKVQETA MELVQSLLVN
LYLKRETIEL RTSLRNYLHI SLKNKVLNAV RAEVVRNTYQ QHMLADTGLY QADAATNLQL
KELQEQIDAS CAGMPEKCRE VFFLSRKEHL SYQHIAQRLG ISVNTVEKHM VKALKILRSR
LKEYNFTLFW LMLLVVLGWE IFSKF
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