| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4786 |
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| Symbol | |
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| ID | 8360962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5957635 |
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| End bp | 5960334 |
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| Gene Length | 2700 bp |
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| Protein Length | 899 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966936 |
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| Product | zinc finger CHC2-family protein |
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| Protein accession | YP_003124421 |
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| Protein GI | 256423768 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000150755 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.630286 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGAAA TAGCAGCCAT TAAGCAGCAG CTAACGTTAT CGCAGGTGCT GATGCATTAC
GGGTTAAAAC CTGATAAGCA CCTGCGATTA CACTGCCCGT TCCATGATGA CAAGACCCCG
AGCCTGCAGG TGTATTACAA GACGCAAACC TGTTATTGTT TTAGCAGTAA CTGTAAGACG
CATGGCAAGT CGCTGGATGT GATCGACTTT GTGATGCATA AGGATGGTAT CAGTAAACGG
GAAGCGATCC TGAAATGTAA GGAGCTGATA GGCGGAAGTA CGAGTGCGGT CGCTGCTGTA
CCGGTTAGCC GTTCAGGCAT CCTGAACTAT ATGTTTACCT ATTTTAAGAA TGCGATCCAT
AACAGCAAAC CTGCGCAAGC GTATCTGCAA AGCCGCGGCT TAGACATTAC CCGTTTAGAA
GTTGGCTATA ATACGGCGCA GTTCCATCAT GGCGCCCGCA GGGATGAAGC GTTGATATCG
GCATGTGTAT CGGTAGGTTT ACTGTCTGCC TGGGGTTCTA ATACCCGCGA AGGAACCCAG
GCTTATAAAC CTTTTGGGAA ATATTGTATC GCGTTTGCGT TACGGGATAG CGGCGGTGAA
ATCAGTGGGA TGTACTTCCG CAGTACGGTC AATGATAGTG ACCAGCGTCA TTATTACCTG
AAAGACCGAA AGGGCTTGTA TCCAGGTTAT CCGAAATCAG CTATCACCCG GTTGATCCTG
ACCGAATCGG TGATAGATGC AGCGACTTTG TTACAGCATC ATGAGATAGG TAAGGGGTAT
GGTATCCTTG CCTGTTATGG TACGAATGGG TTGACCTCAG AGCATGAGGC GGCAATAGTG
GGTTTAGGTC AGCTGCAGGA GATCATTTTT GCTTTTGATG GGGATGAAGC AGGTCGTAAG
GCGGTAGAGA AATACAGCAG TTCCTTAAAG GAACGTCTGC CTTATGTCCA GCTGAGCAGC
ATTGTACTGC CAGATGGAGA GGACATTAAT AGTATGGGCG TGAGCCATAC GGCAGAGGTG
TTTACGGAGT TATTGCAAAG TAGGACTAGT TTATTTTTTT CAACTGAAGT ATCAGCTGAA
AAAATAACCC CATCATCACC GGAAAGCACG GCGGTTGTAT CAGATGGCAC CGTATTAGAC
AGCCGTAATC CCTATAAGTT ACTGTATGTG GGTACAGGGG GTAATTACTA TATACAGGGA
GGACTCAGTA AGCAGCTGGA CAGTATGAAG GTCACGCTGG TGATCGAGCA TAAAGAGAGT
AGTCAAAAGA GCCGTAATAA AGTAGACCTG TATGAGGACA AACAGGTAGA ACGCTTATGC
AGGGAGGCAG GTGAGAAACT GGGCTTGCGC AAAGATGTGG TGGAACAGGA CCTCTACCGG
TTGACAGACC TGCTGGACGG GTACCGGGAG GCAGAACAGG GAAAAGGAGA ATCAACAGCT
GCTGAAAGCG TTGCGGTGTA TACTTTGAGT GAATCAGCCC GTAATACAGC CGTTCGTTTT
TTGCGTCAGG AAGACTTATT ACAGGCATTG AATGTATTAT TAGGAGAAAC GGGTATAGTC
GGAGAGGAAC AGAACCGTTT GTTTTTATTG TTGGTAGCAC TGAGTTATAA GATGCCTGCG
CCTTTACATG CACTGATACA GGGGAGTAGT GGAAGTGGAA AGACGCGTTT ATTAAAGCAG
GTATCAGACT GTATACCGCC TGAGAAAGTG ACGCGTCTGA CGCGGGTAAG TGATAAGGTA
TTATACAATT ATCCTGAACG TTACTTTATG AACCGGTTGT TATGCCTGGA AGATATAGAC
GGGTTGAGTG AGGAGGCAGA GTTCGCGTTC CGTGAGTTGC AGAGTAATGG AGAGTTAAAC
AGTGCGACCA GCATTAAGCT GGATAATGGT CAGATCACGA GTGGCCAGAA GACGGTAAGA
GGTCCGATAG CGAGTCTTGC TTGTACGACG AGAGGGGAGC TGTATGAGGA TAATATGAGC
CGAGTGTTCC TGATAGCGGT AGACGAGAGC GGGGAGCAGA CGCGGCGTAT TATTGGTTAT
CAGAACAGTA AAGCAGCAGG GGAGATAGAT ACAGGTAGAG AACAGGAACG TAAAGAATTT
ATCCGTAACC TGGTACGCAG CTTAGAACCG TTAGAGGTGG TGAATCCCTA TGCAGGTCGT
TTACAGTTAC CAGAAGATGC GCATAAGATC CGTCGTTTAC ATGACCTGTT TTTAAACTTT
GTGAAGATGG TGACCTTGTT ACATCAGTAC CAAAGGAGGC GGGATAGTAA AGGTCGGTTG
GTCGCTGAGT TGAGTGATGT GGAATCAGCG ATCGGTATCA TGTTCGACAG CATTGTATTA
AAGGTAGATG AACTGGACGG TAGTCTGCGA CAGTTTTATG AGCAGTTAAA GGAGTACTTA
CGTGGTAAAT ATGGGACTCA TTATAGTCAG TCGGAGTTTA CGTTACGAGA GATCCGTCAG
GGCTTACATC TGAGCAAGAC CCAGTTGTTC CGTTACGCCC AGGATCTGGT ACGGCTTGAA
TATATCTGTA CCTGTGGAGG TCACCACAAT AAGGGCTTTA CGTACAAGAT CGTTTACTGG
GATAACTATC AGGGTCTTCG TGAGCGTATC CGGACACACC TATCTAATCA GTTATCAGCG
ATTAAAGTTG GAACGCCAGC AGGTGATCTG GAACGCTACG GAACGCCAGT GGAACGCTAG
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| Protein sequence | MMEIAAIKQQ LTLSQVLMHY GLKPDKHLRL HCPFHDDKTP SLQVYYKTQT CYCFSSNCKT
HGKSLDVIDF VMHKDGISKR EAILKCKELI GGSTSAVAAV PVSRSGILNY MFTYFKNAIH
NSKPAQAYLQ SRGLDITRLE VGYNTAQFHH GARRDEALIS ACVSVGLLSA WGSNTREGTQ
AYKPFGKYCI AFALRDSGGE ISGMYFRSTV NDSDQRHYYL KDRKGLYPGY PKSAITRLIL
TESVIDAATL LQHHEIGKGY GILACYGTNG LTSEHEAAIV GLGQLQEIIF AFDGDEAGRK
AVEKYSSSLK ERLPYVQLSS IVLPDGEDIN SMGVSHTAEV FTELLQSRTS LFFSTEVSAE
KITPSSPEST AVVSDGTVLD SRNPYKLLYV GTGGNYYIQG GLSKQLDSMK VTLVIEHKES
SQKSRNKVDL YEDKQVERLC REAGEKLGLR KDVVEQDLYR LTDLLDGYRE AEQGKGESTA
AESVAVYTLS ESARNTAVRF LRQEDLLQAL NVLLGETGIV GEEQNRLFLL LVALSYKMPA
PLHALIQGSS GSGKTRLLKQ VSDCIPPEKV TRLTRVSDKV LYNYPERYFM NRLLCLEDID
GLSEEAEFAF RELQSNGELN SATSIKLDNG QITSGQKTVR GPIASLACTT RGELYEDNMS
RVFLIAVDES GEQTRRIIGY QNSKAAGEID TGREQERKEF IRNLVRSLEP LEVVNPYAGR
LQLPEDAHKI RRLHDLFLNF VKMVTLLHQY QRRRDSKGRL VAELSDVESA IGIMFDSIVL
KVDELDGSLR QFYEQLKEYL RGKYGTHYSQ SEFTLREIRQ GLHLSKTQLF RYAQDLVRLE
YICTCGGHHN KGFTYKIVYW DNYQGLRERI RTHLSNQLSA IKVGTPAGDL ERYGTPVER
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