| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4762 |
|---|
| Symbol | |
|---|
| ID | 8360938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5936943 |
|---|
| End bp | 5938094 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644966913 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_003124398 |
|---|
| Protein GI | 256423745 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000017153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0991066 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAG CTGATATCAT ACAGGAAGCC ATTCAGATGG TAGATCTGAA AGGACAATAT
CTGAAGATCA AATCAGATGT AGATAAAGCC ATCCAGGAGT GCATAGATAC TACTGCCTTT
ATTAACGGTC CACAGGTAAG TGCTTTTGCC ACCAAACTGC AACAGTACCT GGACGTGGAA
AAAGTAGTGA CCTGCGGTAA CGGTACAGAT GCATTACAGA TCGCTCTGAT GACCCTCGGT
CTTGAACCGG GTGATGAAGT GATCGTACCT GCATTCACCT ATGTAGCCAC CGCAGAGGTA
ATTGGTCTCT TACGACTGAC ACCTGTTATG GTAGAAGTAA ACCCGCAGAC TTTCACCGTT
GATCCGGCTG AAATCGAAAA GGCCATCACG CCAAAGACCA AAGCCATCGT GCCGGTACAT
ATTTATGGAC AATGCGCCGA TATGGATGCT ATCATGGCCA TTGCGGAAAA ACATGGTCTG
CATGTGATAG AAGACACGGC CCAGGCTATC GGTGCAGAGT ATATCCACGC AGATGGCAGT
CGCAGTAAAG CAGGTACTAT CGGCACATTC GGTTGTACTT CCTTTTTCCC TTCAAAGAAT
CTGGGATGCT ACGGAGACGG CGGCGCCATG TTCACCAATG ATCCTGCACT GGCAGAAAAG
GCGCATATGA TCGCCAACCA CGGACAAAAG AAACGATACT ATCATACGTA TATCGGCTGT
AACTCCCGGC TGGATACTAT CCAGGCAGCA GTACTGGGTG TGAAACTGGA CTACCTGGAT
GATTATAACG AAGCCAGGAA CAAGGCCGCT AACTTCTATG ATGCTTTACT GGCAGACGTG
GAAGGACTGA TACTGCCTTA TAGAAATCCA TCCTCCACAC ACGTCTTTCA TCAGTATACC
ATGCGTGTGA AAGAGGGCAG GAGAGATGAA TTGCAGGCTT ATCTGAAAAG CAATGGTATT
CCATCCATGA TTTATTACCC GGTGCCTTTG CATCAGCAGG AAGCTTTCAA AGGTGTCGGA
AGAAGGATTG GTACGCTGGA ACTGACAGAA CAGTTGTGCA GCGATATCCT GTCTTTACCG
ATGCACACCG AACTGACAGA TGAAGTACAG CTGACAATTA GCAATACGAT AAAGGACTTT
TTTAAACGAT AA
|
|---|
| Protein sequence | MLKADIIQEA IQMVDLKGQY LKIKSDVDKA IQECIDTTAF INGPQVSAFA TKLQQYLDVE
KVVTCGNGTD ALQIALMTLG LEPGDEVIVP AFTYVATAEV IGLLRLTPVM VEVNPQTFTV
DPAEIEKAIT PKTKAIVPVH IYGQCADMDA IMAIAEKHGL HVIEDTAQAI GAEYIHADGS
RSKAGTIGTF GCTSFFPSKN LGCYGDGGAM FTNDPALAEK AHMIANHGQK KRYYHTYIGC
NSRLDTIQAA VLGVKLDYLD DYNEARNKAA NFYDALLADV EGLILPYRNP SSTHVFHQYT
MRVKEGRRDE LQAYLKSNGI PSMIYYPVPL HQQEAFKGVG RRIGTLELTE QLCSDILSLP
MHTELTDEVQ LTISNTIKDF FKR
|
|---|
| |