Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4641 |
Symbol | |
ID | 8360814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5797824 |
End bp | 5802209 |
Gene Length | 4386 bp |
Protein Length | 1461 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644966795 |
Product | YD repeat protein |
Protein accession | YP_003124283 |
Protein GI | 256423630 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.32679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00117662 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAGTTTA ATAAAAATGT AATTCATCCT ATAACACTGG GTGCTTTCCT GATTGTACCA GTTTTTTTGG CGGCACAAAA CAAGCCTGGA GGAATACGCA CAACAGCGAC GCCTGTAGCT GTTCCGGCGG CATATACAAA TACGCAAACG AATTATGTCA GGACCTGGGA GCCAGATATG CCTTTAACAG ATCCTGCTGC TGTCGTGTCG GCGGCTCGGA AAGCGAGGGA GGTAAAACAG ACTACTCAGT ATTTGGATGG TTTGGGCAGG CCTTTGCAAA CTGTTTCGAA AGCTACAAGT CCCAATGGCC GGGATATTGT TGTGCCAGTT GTTTATGATG CTTATGGCAG GGAAGAGTTC AAATACCTTC CTTATGTGCA ACAAACAGCC AGTGACGGTA AATTTAAAAT GGCTCCTTTT TCTGCTCAAA GGGATTTTTA TAAGAACGGG GTACTCAATC CGGGAGTTGC GGAAGACAGC ATTTACTATA GCCGGACGCA ATATGAGTCT TCTCCACTGA ACAGGCCATT GAAGGGTTAT GCTCCAGGGA GCAGCTGGGC GGCCAAACCT GCAGAAACCC GCTATCTGGT TAATACGGTG AGCGACTCTG TTCGGATTTG GAATATGGGA ACTGTTGTAC CTACGAGCAA TTCTAACTAT GGTGCCGGGC AGTTACAGAA GAATGTAAGT ATCGATGAAC ATGGTAGTCA GGTAGTTGAG TTTAAGGACA AAGAAGACCG GGTTGTTTTG AAGAAAGTAC AAATTGCGAA TAATCCCGGT ACCGGACATA TCGGATGGCT GTGTACTTAC TATGTATATG ATAATTTGGG GATGCTTCGC TTCGTCATCC CCCCGTTAGC CGTGGAAGCG ATCAAAGGGG GGTGGACGAT AAGTACTGTT GTGGCCAATG AGTTGTGTTT TCAATATCAG TATGACACCA GACAAAGGAT GACCCTTAAA CAGGTTCCTG GAGCAGGTGC GCTTTTGATG GTGTATGATG TGCGGGACAG GCTGGTGTTT ACGCAAGACT CAGTTCAGCG TGCGAAATCT CCGATGGAAT GGTTGGTGAC CTTTTATGAT GACATCAACC GGCCTACGAT GACGGCAATT TATAAGGCAA CGGCGACAAG GGATACCCTA CAAGCGAGAA CGAACCGGGC TCCGACATAT CAGAGTGTAT CTTATGTGCA GGCGGCAAAG GCAGATCTGG CGTTGTACAG CCATGATGGT ACACCTTTAT ATACTGCGAC CAACAGCATC GAGCTATTGG ATGGATTCGA TACAAATGGA TCCGGTGATA CTGAGGCCAA AATAGATGGT TCGGTCACAG GAGATACGAA TATAATCACA GCCAGCAATC CTTTGCCCAA CATCCCTGCT TCTGCTTTAA CACCCCTCTC CTATACATTC TATGATAATT ATAATTATTC CGGGAAGTTG GCCTTTGTGG GTACAGATAC GGGAAAGCTC CTGGCGGCAG ATACCCTCTA TCCTGAGCGG CTTCCAATAA CAAATGTGAC GCAAGGCCTT GTGACCGGTA GTAAGATAAG GGTATTGGGT ACGGAAAAAT GGCTGACGAC TACCACCTAT TATGATGACA AGGCCAGGGC GATTCAGGTG GTAAGTGAGA ATAATCTTGG TGGGAAGGAT GTATTCAACA CACTTTACAG CTTTAAGGGA CTTGTATTGG GCACTTATCT GCGCCATCAG AACCCTAAAA GCAGTATGTC ACAAAGTACC TTATTGACCA CTATGACTTA TGATCATGGC GGACGGTTAT TGACGGTAAG AAAAAGGCTA AATGATGATG TTAATCAAGA GAAGCTGATT GCCTCCAATA GTTATGATGA ACTTGGACAG CTTAGACTGA AGCGTTTAGG AGTGACATCT TCAGGAAGTA TGATTGACAG TTTGAATTAT ACCTATAATA TCCGTGGCTG GTTGCAGGGT ATCAACAAAA ACTTCGTGAA CAGCGGAACC AGTACATCTA ACTGGTTTGG ACAGGAACTG AGTTATGATT ATGGCTTTGA TTCCGCCCAG TATAATGGGA ATATATCAGG GGTGAAATGG AAAACGCGTG CTGACAGTGC CTGGGCGTAT GGTTATAACT ATGACAAAGC AAACCGTCTG GCTGGGGCGT ATTTTACCCA GAAAAATGGT GGCAGCTGGG CTCAGGACAA GAAGAATTTT TCTGTCAGCA ATCTGAGTTA TGATGCCAAT AGCAATATCA AAACCATGTT GCAGAAGGGC ATGGTAGGCA CCACCAGCAA AACGATAGAT AGCCTTATCT ATTCATATTC TGCGAACAGT AATAAACTGG CCGGGGTGCG TGACATTGAC TCATCGATTA CGAAGTCGGC GCAGCTGGGT GATTTTATAG ATGGAAACAC AGGTGCAACT GATTATGGTT ATGATGGCAA TGGCAACCTG ATCTCGGATT TGAATAAGAG GATTACTTCA ATCAGTTACA ACCATCTGAA TCTTCCGTCT GTGATCACCA TTACGGGTAA AGGAACGATA ACCTACCAAT ATGATGCTTC AGGAAACAAA CTATCTAAGA CGGTTTTGGA TAACAGCGGG AGTTCACCTA AAACTACAGT TACAGATTAT GCTGGTGCCT TTGTGTACAG GCAAGATAGC CTGGAGCTAA TCGGCCATGA AGAAGGTCGT ATCCGTCCGA TTTATAAAAG CGGGCAACCG ATAGTGTATG CTTACGATTA TTTCGAGAAA GATCACCTGG GCAATGTGCG CACGGTGCTG ACCGATCAGA CTGATTTTAC GATGTATGCG GCGACTATGG AGACTGAGGC GGCGCCTCAG GAGGCTGCAT TGTTTAGCAA TGTGGAGGAA ACACGGGCTG AAAAACCATC GGGCTATCCG GAAGACCAGA CCACAGAGGA GAACAAATCG GTAGCGAAGC TGAATGCCAA ACAGGGCGGT AAGAAGATCG GGCCTTCATT GGTATTGCGG GTAATGGCTG GCGATACGGT TCAGATCAAT GCGAAGGCTT TCTATAAATC TCAGGGACCA ACGGACAATA CGGCCAAGGC TGCTGTAGAG GATATGATTG CTGGATTGGT ACAGGCTTTT GGTAGTAGTG TTGGGGAAAG TGATTTGCAT GCTTCAGAAG TCGTTTCGAA TAATACTCCT TTTAACGCAG ATTTCTATAA TAATGATTAT CAACGTTTAA AAGAGAAAAG TCAGGCAAAT GAAGAGTCTA ACCGCCCTAA GGCTTATTTA AACTTTGTTT TATTCGACGA TGATTTTAAA TTAGTGAAGG ATAACAGCGG GGTAAGGCAG ATCAAGGCTG ACCCGAACGA GCTGCAAGAG CTTGGTGTGG ATAAGATGGC GGTTGCCAAA AGTGGTTTCT TGTACGTTTA TACGAGCAAC GAAAGTCAGC AGGATGTGTT CTTTGATAAT GTTGTGTTGG GATTGAGTAG CGGACCTCTA TTGGAAGAAA CGCATTATTA TCCGTTTGGC TTGACGATGG CGGGGATATC GACAAATGCG TTGAAGGGTG TGAATTATGC TAAGAACAGA AAGGAGTTTA ATGGAATTGA GCATACTACC GATCTTGATC TTAATCAATA CGATGCTTTT TATAGGACAT TAGATCCGCA GATTGGGAGA TGGGCGCAGG TTGATCCTAG ACCTCATGAG ATGTTTAGTC CTTATGTTGC CATGGCAGGA AATCCCATTC TATACTCTGA TCCTCTTGGC GATACCACCT ATAGATTTGA TACCAAGGGA ATTTATTTAG GGATGTTTGA CACCGACCAA GCAGGAATGG TGGGTGCATT CGGATCGAAT TCTACGTCTA AAGATGGGAA GGGTAACGAG AAAACAACAT ATAATGCAAT TACCTATTTT GGTTTCAACG ATCCAGAAAA TGATGCAGAA CAATTGGCTA CCATGACAGT TGGACTAAAA GGATTAGTAA TAGTTTCAGA CGAAAACATT AATTATGTGA TGGATAGATC AGATAGCAAA CACAGATCTA TGATTTCGCG ATGGTTTTTT GCTTTTAGAG AAAGCGAAGA CCGAATGGAC TTTAATTGGA ACTATACGTT ACCAAGTCAG GGGGTACTTC CTAACTCCCA TGATATGTCT GACTACGATG GCATTGGCGG ATTTATGTTA TTTTCGGGTG CAAGTACAAA TGCATATAAT TTAAATGATG CAGGGCAATT TTTATGGGGA AACTCTATGC AGCGAATGGG TTTCGGATAC TTTAGTGCAA AATTCGGTTC TCAAGCGAAC GAGTTATTTG GTGATACGAA GGCCGATCAA CAAGCAATAA GAAAAGGATT CCATTATAAA GTACGCACAT CGAAAATAGC TGCTGGACCA TTTAATGGTT TACCTAGAGA AGTAGAGGAC AAATAA
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Protein sequence | MEFNKNVIHP ITLGAFLIVP VFLAAQNKPG GIRTTATPVA VPAAYTNTQT NYVRTWEPDM PLTDPAAVVS AARKAREVKQ TTQYLDGLGR PLQTVSKATS PNGRDIVVPV VYDAYGREEF KYLPYVQQTA SDGKFKMAPF SAQRDFYKNG VLNPGVAEDS IYYSRTQYES SPLNRPLKGY APGSSWAAKP AETRYLVNTV SDSVRIWNMG TVVPTSNSNY GAGQLQKNVS IDEHGSQVVE FKDKEDRVVL KKVQIANNPG TGHIGWLCTY YVYDNLGMLR FVIPPLAVEA IKGGWTISTV VANELCFQYQ YDTRQRMTLK QVPGAGALLM VYDVRDRLVF TQDSVQRAKS PMEWLVTFYD DINRPTMTAI YKATATRDTL QARTNRAPTY QSVSYVQAAK ADLALYSHDG TPLYTATNSI ELLDGFDTNG SGDTEAKIDG SVTGDTNIIT ASNPLPNIPA SALTPLSYTF YDNYNYSGKL AFVGTDTGKL LAADTLYPER LPITNVTQGL VTGSKIRVLG TEKWLTTTTY YDDKARAIQV VSENNLGGKD VFNTLYSFKG LVLGTYLRHQ NPKSSMSQST LLTTMTYDHG GRLLTVRKRL NDDVNQEKLI ASNSYDELGQ LRLKRLGVTS SGSMIDSLNY TYNIRGWLQG INKNFVNSGT STSNWFGQEL SYDYGFDSAQ YNGNISGVKW KTRADSAWAY GYNYDKANRL AGAYFTQKNG GSWAQDKKNF SVSNLSYDAN SNIKTMLQKG MVGTTSKTID SLIYSYSANS NKLAGVRDID SSITKSAQLG DFIDGNTGAT DYGYDGNGNL ISDLNKRITS ISYNHLNLPS VITITGKGTI TYQYDASGNK LSKTVLDNSG SSPKTTVTDY AGAFVYRQDS LELIGHEEGR IRPIYKSGQP IVYAYDYFEK DHLGNVRTVL TDQTDFTMYA ATMETEAAPQ EAALFSNVEE TRAEKPSGYP EDQTTEENKS VAKLNAKQGG KKIGPSLVLR VMAGDTVQIN AKAFYKSQGP TDNTAKAAVE DMIAGLVQAF GSSVGESDLH ASEVVSNNTP FNADFYNNDY QRLKEKSQAN EESNRPKAYL NFVLFDDDFK LVKDNSGVRQ IKADPNELQE LGVDKMAVAK SGFLYVYTSN ESQQDVFFDN VVLGLSSGPL LEETHYYPFG LTMAGISTNA LKGVNYAKNR KEFNGIEHTT DLDLNQYDAF YRTLDPQIGR WAQVDPRPHE MFSPYVAMAG NPILYSDPLG DTTYRFDTKG IYLGMFDTDQ AGMVGAFGSN STSKDGKGNE KTTYNAITYF GFNDPENDAE QLATMTVGLK GLVIVSDENI NYVMDRSDSK HRSMISRWFF AFRESEDRMD FNWNYTLPSQ GVLPNSHDMS DYDGIGGFML FSGASTNAYN LNDAGQFLWG NSMQRMGFGY FSAKFGSQAN ELFGDTKADQ QAIRKGFHYK VRTSKIAAGP FNGLPREVED K
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