Gene Cpin_4541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4541 
Symbol 
ID8360714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5666131 
End bp5666676 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content46% 
IMG OID644966696 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003124184 
Protein GI256423531 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0412674 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGGAGTCC TTCAGTTGGA AGATATTAAG GAGCTGATAA CATTATGTGC CGCTAATGAC 
CGTCTTGGTC AGGAGAAACT TTACCGTAAG TTTTATCCCG CGTTGTTTCT ATTGTGCCGG
AAGTTTTTCC CGGTACAGGA AGACGCATTG GAAGCATTGA ACGATGGTAT GCTAAAGGTT
TTTAAGAACA TCGGTAGGTA CAATGACGAT AAGGGAGAAT TCTTTAACTG GGTCTATACG
ATCGTACGCA ATACGGCACT GGACAAACTC AAGGTCAACG GATGGCCCAG GCATGTGGAA
GTGGACGAGA TCATCATTCC GGATAATGAT AATCCGCTGA CAGCCCTGGA GTCGTCGGAC
ATTTATAAGC TACTGGATGT CCTGCCACCA GCTACAAGAG CGATCTGCAT TTTATTCTAC
CTGGAAGGCT GTCAGATACC AGAGATCGCA GCACAGCTGG AGCTGAGTGC AGGCACCGTC
AAGTGGCATC TGAGCGAGGT AAGAAAGCGG TTGAAACCAG TTTTATTACA GTATTATAAA
AAATAG
 
Protein sequence
MGVLQLEDIK ELITLCAAND RLGQEKLYRK FYPALFLLCR KFFPVQEDAL EALNDGMLKV 
FKNIGRYNDD KGEFFNWVYT IVRNTALDKL KVNGWPRHVE VDEIIIPDND NPLTALESSD
IYKLLDVLPP ATRAICILFY LEGCQIPEIA AQLELSAGTV KWHLSEVRKR LKPVLLQYYK
K