Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4541 |
Symbol | |
ID | 8360714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5666131 |
End bp | 5666676 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644966696 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003124184 |
Protein GI | 256423531 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0412674 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGGAGTCC TTCAGTTGGA AGATATTAAG GAGCTGATAA CATTATGTGC CGCTAATGAC CGTCTTGGTC AGGAGAAACT TTACCGTAAG TTTTATCCCG CGTTGTTTCT ATTGTGCCGG AAGTTTTTCC CGGTACAGGA AGACGCATTG GAAGCATTGA ACGATGGTAT GCTAAAGGTT TTTAAGAACA TCGGTAGGTA CAATGACGAT AAGGGAGAAT TCTTTAACTG GGTCTATACG ATCGTACGCA ATACGGCACT GGACAAACTC AAGGTCAACG GATGGCCCAG GCATGTGGAA GTGGACGAGA TCATCATTCC GGATAATGAT AATCCGCTGA CAGCCCTGGA GTCGTCGGAC ATTTATAAGC TACTGGATGT CCTGCCACCA GCTACAAGAG CGATCTGCAT TTTATTCTAC CTGGAAGGCT GTCAGATACC AGAGATCGCA GCACAGCTGG AGCTGAGTGC AGGCACCGTC AAGTGGCATC TGAGCGAGGT AAGAAAGCGG TTGAAACCAG TTTTATTACA GTATTATAAA AAATAG
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Protein sequence | MGVLQLEDIK ELITLCAAND RLGQEKLYRK FYPALFLLCR KFFPVQEDAL EALNDGMLKV FKNIGRYNDD KGEFFNWVYT IVRNTALDKL KVNGWPRHVE VDEIIIPDND NPLTALESSD IYKLLDVLPP ATRAICILFY LEGCQIPEIA AQLELSAGTV KWHLSEVRKR LKPVLLQYYK K
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