Gene Cpin_4405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4405 
Symbol 
ID8360578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5488074 
End bp5489489 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content49% 
IMG OID644966564 
ProductHHIPL1; HHIP-like 1 
Protein accessionYP_003124052 
Protein GI256423399 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2133] Glucose/sorbosone dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0608136 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCA ATTCCACTAA AGCCAACTGC ATGCTGCGCC GTATGACCGG CCCTATTTCA 
GTTGCCCTGT TTACTGTACT GTTTGCATTT CCAGGATGTA AAAAAGATGA CGACAAACCA
CCTAAAGCTG TAGACACAAA AGTAATTGCT GAAAACCTCG TGTCCCCTCT TGGTCTGGTA
GAGGCGCCAG ACCGTAGTCA CCGTTTATTC ATTCATGACC AGGCAGGCAA AATATGGATT
GTGGATGAAG ACGGTACCCA ACTTTCCACC CCCTTCCTGG ATGTGACTGG TAAAATGGTT
GGTCTGAATC CAGGTTACGA TGAACGCGGT CTGCTGGGAT TTGCTTTTCA TCCCAATTTC
CGCAACAACC GCAAGTTCTA CATTTATTAC ACCTTGCCAC CACGTCCAGG GGGCCCCAGC
GGAGGCGGTA CATGGAATAA CCTGAGCCGT ATTTCTGAAT TCACTGCTTC TGCTGCCGAT
CCCAATGTAG CCGATCCGGG CACCGAAAAA GTGATCCTGG AACTGGATGA TCCGCAAAGT
AATCATAATG GCGGCGCTAT CGGTTTTGGA GAAGATGGTT ACCTCTACAT TGCCATCGGA
GATGGCGGCG CGGCAAATGA TGTGGCACCC GGCCATGTGG AAGACTGGTA TGCGACTAAC
CAGGGAGGTA ACGGACAGGA TATCGAAGCC AACCTCTTTG GTAATATCCT GCGGGTAGAC
GTTAATAGCG GCAATCCTTA TAGTATTCCT GCGAGTAATC CTTTTGTGGG CAAACCGGGA
AAGGATGAAA TCTGGGCCTA TGGTTTCCGT AATCCTTACC GTTTCTCATT TGATATGGGT
GGTTCCCACT GGCTGTATGT CGGTGATGCC GGACAATCTC TTTATGAAGA AATAGACGTG
GTAACCCGGG GAGGTAATTA CGGATGGAAT GTAAAAGAAG GCACCCATTG TTTTGATGCG
GCACATAATA CGGTGGAGTT ACCGGGCTGT CCTGTACAGG ATACGATGGG CAAACAACTG
ATAGATCCGG TGATTGAGAT GAACAACGCC AGTAATCCTA AGGGAGGTAA AGCAACGACG
ATTATCGGGG GAAATGTGTA CCGTGGGAAT GATCTTCCGC AACTGAGGGG TAAGTACATC
TTTGGTATTT TCTCACAACC GGGTGGGACA CCCAATGGAG AATTGTATAT GAGTAGTCCG
GCGGGTAGCG GTTTATGGTC TTTTGAAGAA CTGATCCTTA AAGACCGGCC AAATGATATC
GGCTATTACC TGAAAGGCTT CGGGCAGGAT CTGGATGGAG AAGTATATCT GACTGTCTCC
GGTGTTGCTG GTCCTACGGG TAATACCGGT AAGGTACTCA AGCTCATACC AGAAAAGAAA
GACAATAGTG GACCCGGCCA TGGCGGTAAA TGGTAG
 
Protein sequence
MKINSTKANC MLRRMTGPIS VALFTVLFAF PGCKKDDDKP PKAVDTKVIA ENLVSPLGLV 
EAPDRSHRLF IHDQAGKIWI VDEDGTQLST PFLDVTGKMV GLNPGYDERG LLGFAFHPNF
RNNRKFYIYY TLPPRPGGPS GGGTWNNLSR ISEFTASAAD PNVADPGTEK VILELDDPQS
NHNGGAIGFG EDGYLYIAIG DGGAANDVAP GHVEDWYATN QGGNGQDIEA NLFGNILRVD
VNSGNPYSIP ASNPFVGKPG KDEIWAYGFR NPYRFSFDMG GSHWLYVGDA GQSLYEEIDV
VTRGGNYGWN VKEGTHCFDA AHNTVELPGC PVQDTMGKQL IDPVIEMNNA SNPKGGKATT
IIGGNVYRGN DLPQLRGKYI FGIFSQPGGT PNGELYMSSP AGSGLWSFEE LILKDRPNDI
GYYLKGFGQD LDGEVYLTVS GVAGPTGNTG KVLKLIPEKK DNSGPGHGGK W