| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4373 |
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| Symbol | |
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| ID | 8360546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5440140 |
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| End bp | 5440706 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644966533 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003124021 |
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| Protein GI | 256423368 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000286392 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.018882 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGTAT CTGACTTTCA GCATATCCCG GAAAATGAAC TCTGGCAACT TGTCAGAGAA
GGCAACGTGT CCGCTTATGG TGAGTTATAT GAACGTCATT GGGAAGCCCT TTTTGAAACC
GCTTACTGGC ATCTGTACGA TAAAGCAGCC GCGAAGGATA TCGTGCAGGA GGTATTTGTG
TATTGCTGGC AAAAAAGGGC GCAGATAGAG ATCAATGAAT CCGTTGTGGC TTATTTCCGG
GCGGCGGTCC GCTTTAAGGT ATTGAATTAT CTGAAGGCGG AGAGTGCCAG GGAGAAGTAT
CAGCAACTGG CTGGTCAGTC TATACCTGTT ATTACGCATA CGACCAGTGA GTATATGGCC
GAAGCAGATT TACAGGCCAG TTATCACCGT GAACTGACCC GTCTGCCTGA TAAGATGCGG
GAGGTGTTTA TAGATAGCCG CGATCACGGT TTGTCTATAG AGGAGATAGC CGAAAAAAGG
GCTATTTCTA CACAAACTGT TAAAAATCAA TTGTCTAATG CCTTGAAGAA ACTCAGAAAG
GCCCTCGGCA ATTTTTATAT GGAATAA
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| Protein sequence | MPVSDFQHIP ENELWQLVRE GNVSAYGELY ERHWEALFET AYWHLYDKAA AKDIVQEVFV
YCWQKRAQIE INESVVAYFR AAVRFKVLNY LKAESAREKY QQLAGQSIPV ITHTTSEYMA
EADLQASYHR ELTRLPDKMR EVFIDSRDHG LSIEEIAEKR AISTQTVKNQ LSNALKKLRK
ALGNFYME
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