Gene Cpin_4159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4159 
Symbol 
ID8360332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5187876 
End bp5190929 
Gene Length3054 bp 
Protein Length1017 aa 
Translation table11 
GC content45% 
IMG OID644966329 
Producthistidine kinase 
Protein accessionYP_003123818 
Protein GI256423165 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0934723 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.139569 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAAG CTTACCTATT ACTGGTAACG ATCATCATGT TAACCCAAAC CATTAGAGCA 
CAACAAGAGA CGCCTTATTT CAATACGCTA AGGACTGAAA ACGGGCTTTC CCACAATAAA
GTTAACTGCA TCCTGCAGGA CAAAAGGGGA TTTATATGGT TTGGCACAGA GGACGGACTG
AATAGATACG ACGGTAAATA TTTTACCATA TTCAGAAAGA CTCCCGGCGA TACGACCTGC
ATATCGGGTA ATATCATCAG CGACCTGCTT GAAGACGAGA ATGGCATTAT CTGGATTGCA
ACAGAAGATG GCGGCCTGAG TGCATACGAC TACCGCCAGT CCCCCGATAA GCAATTCAGG
CAATACCGCT ATACGGACGG CAGTGAAAAA AGTATTCCGG ATAATCATGT GAATGCGATC
GTGGATGATC AGCACGGTTA TCTGTGGGTG GGTACCGGTA ACTATCGTAC CAGAAGATTT
AATAAAAAGA CAGGCGAGTT TTCACATCCG GTGAAAACTG GCACCACGGC TATTCTGTCA
CTCAGCATGG ACGCAAATGA CAGTGTATGG GTAGGTCGTG CAGGCGGCGG ATTGTTAAAG
ATCAATGCAC GTACGTTGAA GTACTCGGCA GACAGGCGCT ATGATGATCT TTACGCAAAA
CTGTCACACG TATCCGTTAC AGCGTTATTC CGCGACCACA ATAACGATAT GTGGTATGGC
GCCTGGGATA AAGTCCTGTA TCACTATGAC CACGTCCGCG ACAGGGAAGA AAGTTTCAGC
TACACGCCGG GTAAAAACTC TTTCCCGAAT GATGAAGTCA ATGCCTTTGC AGAAGATAAA
GCGAATCGCC TCTGGATGGG CGGAAAGGAC TCCGGTCTGA TAGTCTATGA TCCTGCACAG
CATCATTTCT CCCATTACCG GCATCAGCCT TTTGCAGATG GTTCGATCGT CAATGACCAT
ATCAATGACG TCTATATCGA CAGGAATAAT ATTGTCTGGG TAGCTACGAA TAACGGCATC
AGTTATCATA ATCCCCTCTA CTACCCTTTT AAACAGGTCT TCCTGCCGGG AACGGGTAAA
GACATAAGCA TCTATGATTT TTACAAGGAT GCCGGTGGCA GGTTATGGAT AGGTACCAAT
GACGGGATTT TTATCAAACC GCCCGGAAAA CAGCCCTTTG AGCACCGGCA GTTAAGCTGG
AAAGGACAAC CTTTAAGTGT GACCAAGTTT TTCCAGGATA GCGACGGCAC TTTTTATATC
GGCACTGATT ACACGCTTTT CATATATGAT ACGCTGAAAC AGACACTGTC TACCCTGCCT
AATACGGAAG GAGATCCGGT GATGAAAAAG CTGATCTCTT CCAGGATTGT ATCTATTGTC
AAAGACACCA TGGATACGCA CCCTGTACTC ATTGTCTCTC CTTATGGTCA TTACCTGAGC
TATTACGATT TTAAAGAGCA GCATTGGGTG ACGCGTAGCG ACTCTGTACA TGCAATATTA
AAAAGATATA ATATCAAGGA TAACCTGATC CGTAAAATGT ACAAGGCAGC CAGTGGTAAT
ATCTGGCTCG CCACTACCCG GCATGGCCTG GGCGACTGGC CACAGAAGGA CGGACAGCAG
ATAAAGTACC TCAAAGGTAT CAGCAATGAT GATGTATATG ATATCATGGA AGGACAGGCC
GGTAATATCT GGATCAGTAC TTATGGCGGC GGACTGAATT ACCTAGATGT GCATACCCAG
AAGGCACAGC ATATCCCTGA ATCAAGTAAT CTGACGGAAG GACTGCAAAC TGACAAAGAT
GGCAATGTGT GGATGGTCTG CAACGGGCAT ATACACAAAT ATGACCCCGC TGCAAAGATC
TATAGCTGTT ACGAACCGCC GACGCTGAAA AAGGACGGAG GAGTTAATGG TTATATGTAC
CAGGATGAGC AGGGGAATAT CTATGTAGGC GGTACGAATT ATTACCTCAG TTTTCAGCCT
GAGAAGATCT CCCTGATTAA TACGGAGCCT GTTGTCTACC TGACCGACTT TAAGATCTTC
AATAATTCCT ACAGCGGTCT GCTGCAAAAA CAGACCATTG AACTGGACTA TAAACAAAAC
TATTTCTCCA TTGAGTTTTC TGCCCCGGAA TTCAGCGGCG ATAATATACA ATACTCCTAC
ATGCTGGCTG GTGTAGATAA GACCTGGAAC AACGTAGGGA AACGGAATTT TGCTTATTAC
TCTAATCTGA AAGGAGGCGA ATATACCTTC CTGGTCAAAG CGAGCAACTG GAAAGGCGTA
TTCGGTAACA GGGTAACAGC GCTGCATATT ACCATCATCC CTCCTTTCTG GACCCGCTGG
TGGTTTTACC TGGTATGCAC ACTGGTCATT GCGGCTGCTA TTTACCTGCT GTACCGTTAC
CGGATCAATG AACTGCTGAA AAGACATGCC ATCAGGAATG GTATTGCCCA GGATCTGCAT
GACAGTGTGG GCTCTACATT AAGTGGTATC TCCGTCTATA GTGAGGTAGC TAAAATCTAT
AATGATCAGC AAAAGACAGA ACAGCTGAAA GAGCTGCTGA ACACGATCGG CCATACGGCC
AATGAAATGA TCTCGGAAAT GTCGGATATC GTCTGGGCGA TTAATCCAAA GAATGACCAT
GTCAGCAGTA TCGTGAAACG CATGGAATCT TACGCAAAAC CATTATGTAC CGCGAAAAAG
ATACAGTTCA TCTTTAGCTG CGACCAGAAA ATAGAAGACC TGAACCTGGC CATGAACCAG
CGTAAGAACT TCTACCTGAT ATTCAAGGAA GCGGTCAACA ATGCGTTGAA ACATGCAGCC
TGCAGCTTTA TCAAAGTTAA TATCAGCTAC CGTAAAAACA TGCTGGAGCT GGATATTGAA
GATGACGGTA TAGGATTTGA TCATGATGCG GTGAAAAGTC CGGAAGTACT GACACTGTCT
GGTAATGGAC TTAGTAATAT CCGGCACCGG GCCAGCGAAA TGAATGCGGA CCTGGGCATA
GAAAGTGAAC CATTAAAAGG GACATATTTA AAATTAAGCT TTCCGGTTAC CTGA
 
Protein sequence
MRKAYLLLVT IIMLTQTIRA QQETPYFNTL RTENGLSHNK VNCILQDKRG FIWFGTEDGL 
NRYDGKYFTI FRKTPGDTTC ISGNIISDLL EDENGIIWIA TEDGGLSAYD YRQSPDKQFR
QYRYTDGSEK SIPDNHVNAI VDDQHGYLWV GTGNYRTRRF NKKTGEFSHP VKTGTTAILS
LSMDANDSVW VGRAGGGLLK INARTLKYSA DRRYDDLYAK LSHVSVTALF RDHNNDMWYG
AWDKVLYHYD HVRDREESFS YTPGKNSFPN DEVNAFAEDK ANRLWMGGKD SGLIVYDPAQ
HHFSHYRHQP FADGSIVNDH INDVYIDRNN IVWVATNNGI SYHNPLYYPF KQVFLPGTGK
DISIYDFYKD AGGRLWIGTN DGIFIKPPGK QPFEHRQLSW KGQPLSVTKF FQDSDGTFYI
GTDYTLFIYD TLKQTLSTLP NTEGDPVMKK LISSRIVSIV KDTMDTHPVL IVSPYGHYLS
YYDFKEQHWV TRSDSVHAIL KRYNIKDNLI RKMYKAASGN IWLATTRHGL GDWPQKDGQQ
IKYLKGISND DVYDIMEGQA GNIWISTYGG GLNYLDVHTQ KAQHIPESSN LTEGLQTDKD
GNVWMVCNGH IHKYDPAAKI YSCYEPPTLK KDGGVNGYMY QDEQGNIYVG GTNYYLSFQP
EKISLINTEP VVYLTDFKIF NNSYSGLLQK QTIELDYKQN YFSIEFSAPE FSGDNIQYSY
MLAGVDKTWN NVGKRNFAYY SNLKGGEYTF LVKASNWKGV FGNRVTALHI TIIPPFWTRW
WFYLVCTLVI AAAIYLLYRY RINELLKRHA IRNGIAQDLH DSVGSTLSGI SVYSEVAKIY
NDQQKTEQLK ELLNTIGHTA NEMISEMSDI VWAINPKNDH VSSIVKRMES YAKPLCTAKK
IQFIFSCDQK IEDLNLAMNQ RKNFYLIFKE AVNNALKHAA CSFIKVNISY RKNMLELDIE
DDGIGFDHDA VKSPEVLTLS GNGLSNIRHR ASEMNADLGI ESEPLKGTYL KLSFPVT