Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3950 |
Symbol | |
ID | 8360123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 4908499 |
End bp | 4910268 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644966124 |
Product | histidine kinase |
Protein accession | YP_003123613 |
Protein GI | 256422960 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.695685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.365281 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAACAA TGGGGATATT TAGAGCGATT ACCCTGACCG GTGCAGACAA CATTGAACTG AATGAAAGGA GCCGAATCAT CAAAGTAAAC ATACTCGCCT GTGTTACAGG TGTTATGGCT TTTTTCTTTG GGACATTATT CTATATCATC TCGGGTAAAC TCAGCATCTT TCTTGGCACA TTAGTGGAAG GAAGCGCGTG TTTCTATGTC ATATATCTCA ACAAACAACG GAAGTATGAT ATCTCTGCTT TCTATTTGCA GATGATACAT AATGCAGCTA CCCTGTATTT CGGCTGTATA CTTGCAAACG TTGTGGAAGC CAGTCTGCTG GCCATATTCC TCATTGGCAC CTCTCTCCTC ATTGTAAAAG ATAAATTATT CCGTACCACC TGTATCGTGG TAGCGCTCAT TACATTGGTA TTGCTGGAAG TGAACCGTTT TTCCGGTATC ATTCCTCCTT ACGATTTCAA TCCACTCACC CATGTCGTGA TCCATTATTC CGCTATTATG GTCATTGTAT CGCTGAATAT TCTCATCATC ATGTTTTATG TCAAACACAA TGATGCCTTA TTGAAAGCGC AGCAGCAACA TGCGGAAAAC CTGGAACAGC AGGTACAAAA CAGGACCGGC GAACTGGAAA AAGCCAATCA TTATAAAAGT ATTTTCCTCC GCGAAACCAA TCATGAGATC CGCGTACCAC TTAATGCCAT CCACTCTATC AGTCAGCTGT TATTAATGGA TGCAGAACGG AATAATGACA CTGCCTATAT CAAACATGCA GAACATCTTT GTGCGGCCAG TCACCAGGCA CTGGACGTCA TCAACAATGT ACTGGAACTC TCGCGGATAG AAGCTGGTAA ATTACATGAA GTACACAACG AAGCATTTGC CATCAGGGAT CTGCTGGAGA ATATCGTAGG TACCGGACAA TACATCGCTA AAACAAAAGG CGTGCGTATT GTACTGGATT ACAACAGACG ACAACTGCCC TCCCACCTGG TGAGTGACAA AATCAAGCTG ACACAGATCA TCAATAATCT GCTGTTTAAT GCGGTGAAAT TTACCGCGAA TAACAGCACC GTTACCTTGT CTGCCAACGT AGAGAACGAT CAATGCCGCA TTAGTGTAAG AGACCAGGGA GCAGGCATCA GCAGTGAGAA AATAGCCCCC ATCTTTGACC CTTTTATTAC CGAATGGAAC AGCTTTTCCG GCGGTACAGG TTTGGGCCTT CATATTGCGC AGCACCTGGC TACCTTACTG GGCGGAATGA TATCTGTGGA AAGCGTAGTC GGAATAGGAA CCATTTTCAG TTTTAACTTC CCGCTGCAGG CCTGTGCCAT GCCGGTACAG ACAGCACTGG AAGAAACGCG CGCAGATGAA TCGCTTTATG CGGGGGTAAA AGTAATGATC ATTGAAGATG ATGATATGAG CCGTATCTAT CTGACGAAAT ACCTGAGCCG CTTAGGCTGC GAAGTAGCAT CTTCCGGTAC AGGTATGGAA AGCCTGGAAT TGCTACAGCA TTTTATTCCT GACATCATTC TTGCCGACAG GCATCTGCCT GATATGGATG CAGAGGAAAT CCTCACTTAT GTAAGAAGCG CAGCGCTGTT ACAGCGTGTA CCGGTGATCG TCATTTCCGG TGATGTATTC GAAGAAGACA AAGTCGCCAC GCTGGAAGCC GGCGCCACTG CTTACCTGAT CAAACCCATT GACTTTAAGC TGCTGAATAT CACGTTGAGC AAATACCTGA ACAGCCCTGC GCTGTTATAA
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Protein sequence | MITMGIFRAI TLTGADNIEL NERSRIIKVN ILACVTGVMA FFFGTLFYII SGKLSIFLGT LVEGSACFYV IYLNKQRKYD ISAFYLQMIH NAATLYFGCI LANVVEASLL AIFLIGTSLL IVKDKLFRTT CIVVALITLV LLEVNRFSGI IPPYDFNPLT HVVIHYSAIM VIVSLNILII MFYVKHNDAL LKAQQQHAEN LEQQVQNRTG ELEKANHYKS IFLRETNHEI RVPLNAIHSI SQLLLMDAER NNDTAYIKHA EHLCAASHQA LDVINNVLEL SRIEAGKLHE VHNEAFAIRD LLENIVGTGQ YIAKTKGVRI VLDYNRRQLP SHLVSDKIKL TQIINNLLFN AVKFTANNST VTLSANVEND QCRISVRDQG AGISSEKIAP IFDPFITEWN SFSGGTGLGL HIAQHLATLL GGMISVESVV GIGTIFSFNF PLQACAMPVQ TALEETRADE SLYAGVKVMI IEDDDMSRIY LTKYLSRLGC EVASSGTGME SLELLQHFIP DIILADRHLP DMDAEEILTY VRSAALLQRV PVIVISGDVF EEDKVATLEA GATAYLIKPI DFKLLNITLS KYLNSPALL
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