Gene Cpin_3797 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3797 
Symbol 
ID8359968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4774814 
End bp4775695 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content47% 
IMG OID644965969 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003123460 
Protein GI256422807 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00910315 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.099485 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAAAC AGCAGAAGAT ACCCGTTCAC CGGATGGAGG AGCGTTTTTC AGGGGTATAT 
GTGGCCCCTT TGGCCCTGGA GAAGTCATCT ACTCCGGGAT ATGAAATTTC ACAGCCACAC
CGGCATGATT TCTATTACTG TGTGTTGCTG GAAAGAGGGA AGATGCAGCT GGAAGTGGAT
TTTCAGCAGG TACAGATCAG TGATCAGTCG CTTTTTCTTT CTTACCCGGG ACAAATCCAC
CAGATCAATG CTGCCCGCAT GGAGCGCGGC TGGTTCCTGG CTTTTGATCC CTCGATGCTG
GATGAACAGC TGAAGACGAT CCTGGACCAG TGTTTGTCGG AGGTGATCCT GGTGCCTGTT
TCTCCTGAGA AGTCCGCGGA TTTATCTTCC CTGATCCATC AATTGTACAA GATTTATGAT
GACCAGTCAC AGCTCTTCCG GCAGACGATC ACACAGTCGA TGGTAACTGC CCTGGTATAC
CAGATCGCAT CCGCTTATTT GTCGATAGAA CGTTTTAACC TGATCAGGCA TTCTACCCGT
AGTATCGAGA TCACCAAGCG TTTTAAGCAA CTGCTGCGGC ATCATTTTAA ATCCATGAAG
AAGCCATCGG AGTATGCTGC GAAGATGAAT ATTACCTCCA GCTATCTGAA TGATATTGTG
AGGTCGGTTA CAGGGTTTTC GGTGACCTAT TACATACAAC ATGAGCTGAT GCGGGAGGCC
CAAAGGTTGT TGTATCATTC TGATCTTGCG GTGAAGGAGA TTGCCGATAC GTTGGGTTTT
GAAGATGCAA AATATTTTAA CCGGCTGTTC AGTAAGATTG TCGGGGTTTC TCCTGGTTTA
TTCAGGAAAC AATCAGAGAC AAGTGTGCAT TTTACAGAAT AG
 
Protein sequence
MRKQQKIPVH RMEERFSGVY VAPLALEKSS TPGYEISQPH RHDFYYCVLL ERGKMQLEVD 
FQQVQISDQS LFLSYPGQIH QINAARMERG WFLAFDPSML DEQLKTILDQ CLSEVILVPV
SPEKSADLSS LIHQLYKIYD DQSQLFRQTI TQSMVTALVY QIASAYLSIE RFNLIRHSTR
SIEITKRFKQ LLRHHFKSMK KPSEYAAKMN ITSSYLNDIV RSVTGFSVTY YIQHELMREA
QRLLYHSDLA VKEIADTLGF EDAKYFNRLF SKIVGVSPGL FRKQSETSVH FTE