Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3797 |
Symbol | |
ID | 8359968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4774814 |
End bp | 4775695 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644965969 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_003123460 |
Protein GI | 256422807 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00910315 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.099485 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTAAAC AGCAGAAGAT ACCCGTTCAC CGGATGGAGG AGCGTTTTTC AGGGGTATAT GTGGCCCCTT TGGCCCTGGA GAAGTCATCT ACTCCGGGAT ATGAAATTTC ACAGCCACAC CGGCATGATT TCTATTACTG TGTGTTGCTG GAAAGAGGGA AGATGCAGCT GGAAGTGGAT TTTCAGCAGG TACAGATCAG TGATCAGTCG CTTTTTCTTT CTTACCCGGG ACAAATCCAC CAGATCAATG CTGCCCGCAT GGAGCGCGGC TGGTTCCTGG CTTTTGATCC CTCGATGCTG GATGAACAGC TGAAGACGAT CCTGGACCAG TGTTTGTCGG AGGTGATCCT GGTGCCTGTT TCTCCTGAGA AGTCCGCGGA TTTATCTTCC CTGATCCATC AATTGTACAA GATTTATGAT GACCAGTCAC AGCTCTTCCG GCAGACGATC ACACAGTCGA TGGTAACTGC CCTGGTATAC CAGATCGCAT CCGCTTATTT GTCGATAGAA CGTTTTAACC TGATCAGGCA TTCTACCCGT AGTATCGAGA TCACCAAGCG TTTTAAGCAA CTGCTGCGGC ATCATTTTAA ATCCATGAAG AAGCCATCGG AGTATGCTGC GAAGATGAAT ATTACCTCCA GCTATCTGAA TGATATTGTG AGGTCGGTTA CAGGGTTTTC GGTGACCTAT TACATACAAC ATGAGCTGAT GCGGGAGGCC CAAAGGTTGT TGTATCATTC TGATCTTGCG GTGAAGGAGA TTGCCGATAC GTTGGGTTTT GAAGATGCAA AATATTTTAA CCGGCTGTTC AGTAAGATTG TCGGGGTTTC TCCTGGTTTA TTCAGGAAAC AATCAGAGAC AAGTGTGCAT TTTACAGAAT AG
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Protein sequence | MRKQQKIPVH RMEERFSGVY VAPLALEKSS TPGYEISQPH RHDFYYCVLL ERGKMQLEVD FQQVQISDQS LFLSYPGQIH QINAARMERG WFLAFDPSML DEQLKTILDQ CLSEVILVPV SPEKSADLSS LIHQLYKIYD DQSQLFRQTI TQSMVTALVY QIASAYLSIE RFNLIRHSTR SIEITKRFKQ LLRHHFKSMK KPSEYAAKMN ITSSYLNDIV RSVTGFSVTY YIQHELMREA QRLLYHSDLA VKEIADTLGF EDAKYFNRLF SKIVGVSPGL FRKQSETSVH FTE
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