| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3740 |
|---|
| Symbol | |
|---|
| ID | 8359908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4700515 |
|---|
| End bp | 4702518 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644965909 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003123403 |
|---|
| Protein GI | 256422750 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.345281 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00604484 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATAG CACTACAGGA TATCACTTTT GAGTTTGGCG CAAGGGCCAT TGTTGAAGAT
GCTTCATGGC ACATTGTACC GGGAGACCGC GTAGGTCTGA TCGGATTGAA CGGAACCGGA
AAATCTACCC TTCTGCGTGT CATCAATGGT GAATACACCG TTTCAAAAGG TAGCGTAAAC
AAGATCAAAA ACCTTTCACT CGGATTCTTT AACCAGGATC TCCTCAGTTT TGAATCGGAT
GAATCTATCC TGAATGTGGG CATGACAGCT TTTGAGGCCG CCCTCAAACT GGAAAAAGAT
ATTGAGCGTA TCACCCTCGA ACTGGAAACC AATGAGGCGG AGGCCCTGCT CATGGAATAT
GCCGACAAAC TCCATGAGTT TGAAGCCCTC GACGGTTATA ATATGCGGCA CAAAACCGCC
CAGGTACTCG AAGGTCTCGG GTTTTCCACC GCTGACCTCG AACGTCCCTA CAGCCAGTTC
TCCGGAGGTT GGCGTATGCG TGTACTCCTG GCTAAACTAA TCCTTCAGCA GCCGGATGTA
CTCATGCTCG ATGAACCGAC GAACCACCTT GACCTCCCTT CTATCGAATG GCTGGAGAAA
TACCTCCTGG GGTATAATGG CGCCGTAATC ATCGTATCGC ACGACCGTTT CTTCCTGGAC
AGAATGGTGA ATAAAATCGT AGAACTTTAT CAGCAGCAGT TACACCACTA TGCCGGTAAC
TACGAAGACT ATGAACAGGA AAAAGACCTG CGCCGCGAAA TGCAGCAACG CGCTTATGAA
AACCAGCAGG ATTATATCCG TCAGCAGGAA CGTTTCATCG AGCGCTTTAA AGCAAAAGCA
TCCAAAGCAG CACAGGCACA GAGTATTGCC AAACGCCTCG ACAGACTCGA AAGAGTAGAA
CAGGTTGACA ACGGTCCTTC CAAGATCCGT ATCAACTTTA CCCCTGATAA AATGCCTGGT
AAGATCATTA CCACACTCAA TAACGTTACA AAACGCTTTG GTAATCTGAC GATTCTCCAA
AATGCCAGCG CAGAGATCAA CCGCGGTGAT AAAATCGCCC TGATCGGTGC AAACGGTAAA
GGTAAATCTA CCCTGCTGCG TGTAATAGCC GGCGTTGAAC CAATGGAAGG TGAACGTATC
GGTGGGCACA ACGTCGTACA AAGCTTCTAC GCACAGCACC AGCTGGAAAG CCTGGACCTG
AACAGCGAAA TCCTCGACGA ACTGAAAAAC TTCGGTAGCG GTCGTACGGA AGTAGAACTC
CGCGCCCTCC TGGGTTGCTT CCTCTTCACC GGCGATGATG TATATAAAAG GATCAAAATC
CTGTCCGGAG GTGAAAAAGC ACGTGTGGCC CTGGCCAAAA CGATCATCAG CCAGGCGAAC
TTCCTCCTGC TCGATGAACC GACGAACCAC CTGGATATGA ACTCCGTACA GATGCTGATT
GACGCACTGG CACAATACGA TGGAACCTAT GTGCTCGTAT CGCACGACCG TTACTTCGTA
AGCCAGACCG CCAACAAAAT CTGGGAAATC GTTGACGGTG AGATCAAAGA ATTCAAAGGC
ACTTACGCTG AATGGGAAGA ATTCAAAAAA CGTCAGGCAG ATGCTGCAAA ACTGGCTGCC
GGCGATAAAA ATGCCAGCGA GTCAAAAAAA AAAGAAGTAA AGACAGAGCG ACCAGCGAAT
AACAATAATA ATAACAACAA TTCCGGTAAT AAGAACAACG CCAAGGTCGA AACGCCGCAG
AAAAATGTCC CTTTTGACAA GGAAAAACAA AAGGAACTGC AGAAGTACAA ACGCCAGTTC
CAGCAACTGG AAGAGCAACT GGCCAAACTG AATGAGAAAA AAGCGACCAT CGAAACTGCC
ATGAACAACC CTGACGTATA TGCCGACAGG AAAAAGTTTC AGCAACTGGA AGCCGAATAC
AATCAGTTGG GTAAAGAACT GAAACAGGCA ACGGAAGAGT ATGAAAAAGT GTTCGAAATA
CTGATGGAAC TGGAAAACAA TTAG
|
|---|
| Protein sequence | MLIALQDITF EFGARAIVED ASWHIVPGDR VGLIGLNGTG KSTLLRVING EYTVSKGSVN
KIKNLSLGFF NQDLLSFESD ESILNVGMTA FEAALKLEKD IERITLELET NEAEALLMEY
ADKLHEFEAL DGYNMRHKTA QVLEGLGFST ADLERPYSQF SGGWRMRVLL AKLILQQPDV
LMLDEPTNHL DLPSIEWLEK YLLGYNGAVI IVSHDRFFLD RMVNKIVELY QQQLHHYAGN
YEDYEQEKDL RREMQQRAYE NQQDYIRQQE RFIERFKAKA SKAAQAQSIA KRLDRLERVE
QVDNGPSKIR INFTPDKMPG KIITTLNNVT KRFGNLTILQ NASAEINRGD KIALIGANGK
GKSTLLRVIA GVEPMEGERI GGHNVVQSFY AQHQLESLDL NSEILDELKN FGSGRTEVEL
RALLGCFLFT GDDVYKRIKI LSGGEKARVA LAKTIISQAN FLLLDEPTNH LDMNSVQMLI
DALAQYDGTY VLVSHDRYFV SQTANKIWEI VDGEIKEFKG TYAEWEEFKK RQADAAKLAA
GDKNASESKK KEVKTERPAN NNNNNNNSGN KNNAKVETPQ KNVPFDKEKQ KELQKYKRQF
QQLEEQLAKL NEKKATIETA MNNPDVYADR KKFQQLEAEY NQLGKELKQA TEEYEKVFEI
LMELENN
|
|---|
| |