Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3587 |
Symbol | |
ID | 8359754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4467890 |
End bp | 4469818 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644965757 |
Product | Diverse 7TM receptor transmembrane region |
Protein accession | YP_003123251 |
Protein GI | 256422598 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.361331 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0015887 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATAGTA TCAAAAAGGG AGTACGACTG ACGGCCCTAT ACCTGCTGCT GATTATTATG GCAGGCATGT TCAGTCATGC TGCTTACTCC CAACAGGCGG TGCACATTGA CAACACGTTA CGCGAACACA TTTTCACGTA CAATGAGATT GAGTACCTGG AGGATCTGCA AGGCCAACTA ACGATCGACC AGGTGATAAG CGACAGTGTA TCTGCACGTT TCAAACCGAG TAACGTCAGT ACACCACAGA ATCAGCATCT GGGTTCTCCG GTCTGGTTCC GCGTAAGGAT CCGGCATAAT CCGGCTGCCA ATAAATATTA CCTGCTGGAA TTCTTTGACC AGACTATTGA CGATATTACT GCCTGGTTGC CCGACTCCAA CGGAGTGTAC AGGGAAGAGA GAATAGGGGA CAAGTATCCC TTTGCACAAC GCTGGTTTCA TCATAAGAAC TTTGAATTGT CGCTGGATAA TAACCGGAGA GATGAAGCGG TTTATTATTT CAGGATCACT TCTGCCCAGA CGGCTGACGT GATCATTGTG ATCCGCTCTA TAGACCGTTT TGTGTCTTAT GCACTCAGTG AATACCTCAC TTTTGGCATT TTCTACGGGA TGATATTCAT TTTCAGTTTT TACAACCTGA TCATGTTTAT CGCCATGCGC CAGCGGCAAT ACCTCTATTA TGTATTGTAC AACCTGAGCG TGGTATTGTA TGAAATGTGT ACGGATGGAA TTGCTTATCA GTGGCTTTGG CCGAATGCAC CGGCGTGGAA TCAGTATGCT TTTGCCTGGC CGTTACTCAG TATGAGCGTT TTTGCCCTTT TATTTACCCG TAGCCTCCTG CATGTACAGG CGAGGGCGCC TTTCCTGAAT AAGCTGATCA TGGGCGTGAT CATCGCCCGT TGTGCCTATT TCCTGGCTTG CCTGCTGATC AATCCGTACT GGTTCAATTA TAAGTTTATA GAACTCATTC CCCTGGCGGT TGCCTTTTAT ACCGGTATGT ATATCTGGCT GAGGGGATAC CGGCCGGCCC GTTTCTTTGT ATTGGGGTAT AGCTTTCTGT TTGTCGGGTT TATGCTGAAA TTCTTTATTA TGCTGGGGTA TACCTGGTTG AATTTCGGCA TTGTCAGTTA TTATAGCCTG AGTTTCTGTT TTATACTGGA AATGTTCTTC CTCTCGTTCG CCGTAGGAGA TAAGGTACGT CTCCTGAAAA AGAAACGGGA TAAGGCGCAC CGTCAGATGA TCAGACAGAT GACGGAGAAT GCGCGTCTGA AGGATAATCA GAACAAGGAA CTGGAGGCCC AGGTACAGGC GAGGACGAAA CAGTTGTCGG AGCAGGGGGA TGTTATTGCG GCGCAGAATG AAGAGCTGAT TAAGACAAAT GCGCTCCTGG AAGCACAGGC GGAAGAGATT TCCCGTATGA ATGCCCTGCT GGAACAGGAT AACCGTCAGT TGCAGACGAA TGTCGAAAAG GTCACCAGGG CCAGGGCATT ATCCACTACC CTTGATTTTG AAGAGTTTAG CAAAATATAT CCGGATAAGG AAAGCTGTCT GCGTTTCCTG GCCGATCTGA AATGGACGGA GCAGTTCCGT TGCCGTAAAT GTGGGAATGA TCACTATTAT GCCGGACATC AGCCATTTAG TCGCCGCTGC AGTAAATGTA GTTATGAAGA ATCGGCCACG GCATACACCA TTTACCAGAA TATCCGTATC CCGATCAATA AAGCCTTCTA TCTCACCTTC CTGATCTACT CCACCAAGGG GAAGATCTCC TCCCATAAAC TCTCAGAGAT CCTGGAAATC AGGCAAAGTA CCTGCTGGTC GTATGCGACC CGTATCCTCA AAATGATGGA TGAGCGAAAG AAAGAACTCA AACAGGCGAA TGGTCAGGGT TGGAGTTTGC TTGTGCTGGA TGAAAGGGAA GAGGTCTGA
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Protein sequence | MNSIKKGVRL TALYLLLIIM AGMFSHAAYS QQAVHIDNTL REHIFTYNEI EYLEDLQGQL TIDQVISDSV SARFKPSNVS TPQNQHLGSP VWFRVRIRHN PAANKYYLLE FFDQTIDDIT AWLPDSNGVY REERIGDKYP FAQRWFHHKN FELSLDNNRR DEAVYYFRIT SAQTADVIIV IRSIDRFVSY ALSEYLTFGI FYGMIFIFSF YNLIMFIAMR QRQYLYYVLY NLSVVLYEMC TDGIAYQWLW PNAPAWNQYA FAWPLLSMSV FALLFTRSLL HVQARAPFLN KLIMGVIIAR CAYFLACLLI NPYWFNYKFI ELIPLAVAFY TGMYIWLRGY RPARFFVLGY SFLFVGFMLK FFIMLGYTWL NFGIVSYYSL SFCFILEMFF LSFAVGDKVR LLKKKRDKAH RQMIRQMTEN ARLKDNQNKE LEAQVQARTK QLSEQGDVIA AQNEELIKTN ALLEAQAEEI SRMNALLEQD NRQLQTNVEK VTRARALSTT LDFEEFSKIY PDKESCLRFL ADLKWTEQFR CRKCGNDHYY AGHQPFSRRC SKCSYEESAT AYTIYQNIRI PINKAFYLTF LIYSTKGKIS SHKLSEILEI RQSTCWSYAT RILKMMDERK KELKQANGQG WSLLVLDERE EV
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