Gene Cpin_3587 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3587 
Symbol 
ID8359754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4467890 
End bp4469818 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content47% 
IMG OID644965757 
ProductDiverse 7TM receptor transmembrane region 
Protein accessionYP_003123251 
Protein GI256422598 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.361331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0015887 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATAGTA TCAAAAAGGG AGTACGACTG ACGGCCCTAT ACCTGCTGCT GATTATTATG 
GCAGGCATGT TCAGTCATGC TGCTTACTCC CAACAGGCGG TGCACATTGA CAACACGTTA
CGCGAACACA TTTTCACGTA CAATGAGATT GAGTACCTGG AGGATCTGCA AGGCCAACTA
ACGATCGACC AGGTGATAAG CGACAGTGTA TCTGCACGTT TCAAACCGAG TAACGTCAGT
ACACCACAGA ATCAGCATCT GGGTTCTCCG GTCTGGTTCC GCGTAAGGAT CCGGCATAAT
CCGGCTGCCA ATAAATATTA CCTGCTGGAA TTCTTTGACC AGACTATTGA CGATATTACT
GCCTGGTTGC CCGACTCCAA CGGAGTGTAC AGGGAAGAGA GAATAGGGGA CAAGTATCCC
TTTGCACAAC GCTGGTTTCA TCATAAGAAC TTTGAATTGT CGCTGGATAA TAACCGGAGA
GATGAAGCGG TTTATTATTT CAGGATCACT TCTGCCCAGA CGGCTGACGT GATCATTGTG
ATCCGCTCTA TAGACCGTTT TGTGTCTTAT GCACTCAGTG AATACCTCAC TTTTGGCATT
TTCTACGGGA TGATATTCAT TTTCAGTTTT TACAACCTGA TCATGTTTAT CGCCATGCGC
CAGCGGCAAT ACCTCTATTA TGTATTGTAC AACCTGAGCG TGGTATTGTA TGAAATGTGT
ACGGATGGAA TTGCTTATCA GTGGCTTTGG CCGAATGCAC CGGCGTGGAA TCAGTATGCT
TTTGCCTGGC CGTTACTCAG TATGAGCGTT TTTGCCCTTT TATTTACCCG TAGCCTCCTG
CATGTACAGG CGAGGGCGCC TTTCCTGAAT AAGCTGATCA TGGGCGTGAT CATCGCCCGT
TGTGCCTATT TCCTGGCTTG CCTGCTGATC AATCCGTACT GGTTCAATTA TAAGTTTATA
GAACTCATTC CCCTGGCGGT TGCCTTTTAT ACCGGTATGT ATATCTGGCT GAGGGGATAC
CGGCCGGCCC GTTTCTTTGT ATTGGGGTAT AGCTTTCTGT TTGTCGGGTT TATGCTGAAA
TTCTTTATTA TGCTGGGGTA TACCTGGTTG AATTTCGGCA TTGTCAGTTA TTATAGCCTG
AGTTTCTGTT TTATACTGGA AATGTTCTTC CTCTCGTTCG CCGTAGGAGA TAAGGTACGT
CTCCTGAAAA AGAAACGGGA TAAGGCGCAC CGTCAGATGA TCAGACAGAT GACGGAGAAT
GCGCGTCTGA AGGATAATCA GAACAAGGAA CTGGAGGCCC AGGTACAGGC GAGGACGAAA
CAGTTGTCGG AGCAGGGGGA TGTTATTGCG GCGCAGAATG AAGAGCTGAT TAAGACAAAT
GCGCTCCTGG AAGCACAGGC GGAAGAGATT TCCCGTATGA ATGCCCTGCT GGAACAGGAT
AACCGTCAGT TGCAGACGAA TGTCGAAAAG GTCACCAGGG CCAGGGCATT ATCCACTACC
CTTGATTTTG AAGAGTTTAG CAAAATATAT CCGGATAAGG AAAGCTGTCT GCGTTTCCTG
GCCGATCTGA AATGGACGGA GCAGTTCCGT TGCCGTAAAT GTGGGAATGA TCACTATTAT
GCCGGACATC AGCCATTTAG TCGCCGCTGC AGTAAATGTA GTTATGAAGA ATCGGCCACG
GCATACACCA TTTACCAGAA TATCCGTATC CCGATCAATA AAGCCTTCTA TCTCACCTTC
CTGATCTACT CCACCAAGGG GAAGATCTCC TCCCATAAAC TCTCAGAGAT CCTGGAAATC
AGGCAAAGTA CCTGCTGGTC GTATGCGACC CGTATCCTCA AAATGATGGA TGAGCGAAAG
AAAGAACTCA AACAGGCGAA TGGTCAGGGT TGGAGTTTGC TTGTGCTGGA TGAAAGGGAA
GAGGTCTGA
 
Protein sequence
MNSIKKGVRL TALYLLLIIM AGMFSHAAYS QQAVHIDNTL REHIFTYNEI EYLEDLQGQL 
TIDQVISDSV SARFKPSNVS TPQNQHLGSP VWFRVRIRHN PAANKYYLLE FFDQTIDDIT
AWLPDSNGVY REERIGDKYP FAQRWFHHKN FELSLDNNRR DEAVYYFRIT SAQTADVIIV
IRSIDRFVSY ALSEYLTFGI FYGMIFIFSF YNLIMFIAMR QRQYLYYVLY NLSVVLYEMC
TDGIAYQWLW PNAPAWNQYA FAWPLLSMSV FALLFTRSLL HVQARAPFLN KLIMGVIIAR
CAYFLACLLI NPYWFNYKFI ELIPLAVAFY TGMYIWLRGY RPARFFVLGY SFLFVGFMLK
FFIMLGYTWL NFGIVSYYSL SFCFILEMFF LSFAVGDKVR LLKKKRDKAH RQMIRQMTEN
ARLKDNQNKE LEAQVQARTK QLSEQGDVIA AQNEELIKTN ALLEAQAEEI SRMNALLEQD
NRQLQTNVEK VTRARALSTT LDFEEFSKIY PDKESCLRFL ADLKWTEQFR CRKCGNDHYY
AGHQPFSRRC SKCSYEESAT AYTIYQNIRI PINKAFYLTF LIYSTKGKIS SHKLSEILEI
RQSTCWSYAT RILKMMDERK KELKQANGQG WSLLVLDERE EV