Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3575 |
Symbol | |
ID | 8359742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4453693 |
End bp | 4454832 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644965745 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003123239 |
Protein GI | 256422586 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0183852 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.158176 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAG ATGTATTAAT TCGGAGCATG CTTGTCCTGA CAGTCCTCGT AGGCCTGTAC AGCTGTAAGT CTTCTTCTGC GCACAACGAA GCCCCCGCTG CTACACCGGC AGAAGTGGTA ACGATTGGCG CAGCTGATAC GAACACTGAA AACGACTATA CAGCATCACT GGAAGGAAAG GTAAATGTAG AGATCCGTTC ACAGGTAGAT GGTTACCTGG AAAAAGTATA TGTAGATGAA GGCGCTTATG TGAAAGCAGG TCAACCTTTA TTTAAAATAG ACGAACACCG CTATCGCGAA CAGCTCAACA ATGCCAAAGC AGCTTTACAC GCAGCAGAAG CATCTGTGTT GAACGCTCAG CTGGAAATAG ACAAAGTAAC GCCACTGGTA AATAACAAGG TGGTGTCCGA CATGCAGCTG CGTACTGCTA AAACTGCGCA TGAAGTGGCT ACAGCTAATG TAGAGCAGGC GAAGGCAATG GTTGCTTCTG CAGCTATCAA CCTGGGTTAC ACGAATATCA CTGCCCCTGT GAGTGGTTAT ATTGGTCGTA TTCCAAAGAA AGCCGGTGCA CTGATCTCTC TGAACGATCC GGAAGCACTG ACCAAACTTT CTGATGTACA TGAGATCTAC GCTTATTTTT CTCTGAGTGA AGGCGATTTC TTCAGCTTCA AAGACAACTA CGATGGTTCT ACGCTGGAAG AGAAGCTTAA AAATCTGCCG CCGGCAATAT TGGTACTGGC TGACAATCAT GTCTATGAAG AAAAAGGTAA AGTAGATATG ATCGACGGAC AGTTTGAGAA GAACACAGGC GCTATCACAC TGCGTGCTGT ATTCCCTAAC GCCAAAGGCA CTATCCGTAC AGGTAACACC GGTAAAGTAA GATTACTGCG TGAACATAAA GCAGCGATCA TCGTACCACA GGCAGCTACT ATCGAAATAC AGGACAGGAT TTTCGTATAC ACGTTAGACA AGGATAACAA AACTGTTCGT CAGGCAATCA CCGTGATCGG TTCCACTGGC AATCAGTACC TGGTAAGTGA TGGTGTAAAA TCCGGAGACA GAATCGTTGT ATCTGGTGTT GACCGTCTGA AAGAAGGTAT GGAAATCAAA CCGGAGAAGG CTAAGCCAGC ACAGAACTGA
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Protein sequence | MKKDVLIRSM LVLTVLVGLY SCKSSSAHNE APAATPAEVV TIGAADTNTE NDYTASLEGK VNVEIRSQVD GYLEKVYVDE GAYVKAGQPL FKIDEHRYRE QLNNAKAALH AAEASVLNAQ LEIDKVTPLV NNKVVSDMQL RTAKTAHEVA TANVEQAKAM VASAAINLGY TNITAPVSGY IGRIPKKAGA LISLNDPEAL TKLSDVHEIY AYFSLSEGDF FSFKDNYDGS TLEEKLKNLP PAILVLADNH VYEEKGKVDM IDGQFEKNTG AITLRAVFPN AKGTIRTGNT GKVRLLREHK AAIIVPQAAT IEIQDRIFVY TLDKDNKTVR QAITVIGSTG NQYLVSDGVK SGDRIVVSGV DRLKEGMEIK PEKAKPAQN
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