Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3547 |
Symbol | |
ID | 8359714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4420000 |
End bp | 4421433 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644965718 |
Product | transcriptional regulator, GntR family with aminotransferase domain |
Protein accession | YP_003123212 |
Protein GI | 256422559 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.224357 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0204741 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGGATA CAATGTTGCT TCATATAGAC AGGCAGTCGT CACAGGCGGT GTATGTACAG CTGGCCAACG GACTGATAAA CCTGATCAGG AGCGGGATAC TGAAACCGGG TACCCGTTTA CCCTCAATCC GGGTCATGGC AGCTGAACTG CAGATCCATG CCAGGACAGT GGTAGCCGCT TATGATGAAA TGGCGGCCCA GGACTGGATC TATAGCAAAC CCCGGTCGGG TATGGTCGTG GCGGAGAATC TGCCTGATCT GAAGCCCCGT ACATTCCGGA CCAGTTTACC GGCAGCAGCA GATAAGTCAG CGGCAGGCGC CGATCCGCAG CAACAATTCC GCTATGTGAT CAACGACGGG TTTCCGGATC ACCGGATTGC CCCGGTCGAA CAGCTGATCA AGCTCCAGCG CCAGGCTTTC TATAACGATG ATGTGGAGCG TACTTCCATG TATTCAGATA GCCGGGGGAG CTTCAGACTC AGGAAAACAC TGGCGGAACA TATCAGCGGC TCCAGAGGAA TCGCTATGAC GCCGGATATG TTATTACTGA CACGTGGTGC ACAGATGGCG ATTTATGTGG TAGCAGCGGC CCTGATTAAA CCAGGAGACG AGGTGTTGGT AGGGGATCCG GGGTACCGAC TGGCAACAGC CGTATTTGAG CAATTAGGGG CCAGAATAAC CCGTATTCCG GTGGATGATG AAGGCATTGA CGTTGACCAG ATCGAAATGG CCTGTAAGAG GAAATTCAGA CTGTTATATA TCGTTCCGCA TCATCATCAC CCGACGACGG TCACATTGAG TGCGGCCAGG AGAATGAAAC TGTTGTCGCT GATCAGAAAA CACCGGTTTT ATACCATTGA AGATGACTAT GATTACGAGT TCCATTATGT CCACCGGCCG ATATTGCCAC TGGCCAGCGC GGAGCATGAC GGTCATGTGT TATATATAGG TTCAGTCACC AAAAACCTGG CAGCCTCCAT GCGCCTGGGA TATTTGATTG CAGGAGAGGA TTTTGTCAGC CGGGCGGCCC AAATCAAAAA AGTGATAGAT CTCCGGGGAG ACCTCTTGTT TGAAGATGCC CTGGCGGTCT TGTTTGAGGA AGGCATCATA CAAAGGCATA TCCGTAAATC CCTGAAATTG TATCAGCAGC GAAGAGATCT TTTCTGCGGA TTACTGGAAA AGGAGCTGGG GGACTATGTC CGCTTCCGGA AGCCAGATGG CGGGATGGCG GTGTGGGTAC AGTTTGACGG TAGGTTTAAG CTGTCTGTGA TCGCTGCCAG AGCGGGGGAG CAGGGATTAA AAATGTCTGA CGGTACGGCT TATGACCCGG TAGCCGAAAG GCTGAATGGG CTGAGAATGG GGTTCGCTTC CCTGAACGAA AGAGAGATGA AAAAAGTGAC GGCTATTCTA AGGAAAATAC TTGAACAATA TTAA
|
Protein sequence | MLDTMLLHID RQSSQAVYVQ LANGLINLIR SGILKPGTRL PSIRVMAAEL QIHARTVVAA YDEMAAQDWI YSKPRSGMVV AENLPDLKPR TFRTSLPAAA DKSAAGADPQ QQFRYVINDG FPDHRIAPVE QLIKLQRQAF YNDDVERTSM YSDSRGSFRL RKTLAEHISG SRGIAMTPDM LLLTRGAQMA IYVVAAALIK PGDEVLVGDP GYRLATAVFE QLGARITRIP VDDEGIDVDQ IEMACKRKFR LLYIVPHHHH PTTVTLSAAR RMKLLSLIRK HRFYTIEDDY DYEFHYVHRP ILPLASAEHD GHVLYIGSVT KNLAASMRLG YLIAGEDFVS RAAQIKKVID LRGDLLFEDA LAVLFEEGII QRHIRKSLKL YQQRRDLFCG LLEKELGDYV RFRKPDGGMA VWVQFDGRFK LSVIAARAGE QGLKMSDGTA YDPVAERLNG LRMGFASLNE REMKKVTAIL RKILEQY
|
| |