Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3211 |
Symbol | |
ID | 8359376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 3962734 |
End bp | 3963333 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644965383 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003122879 |
Protein GI | 256422226 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.288008 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAACGC CTTCTCTTCC CATTTTTATT AACCAGCAAC CTGATTTTGT GAAGAAGAAC AATAACCTAT ACCAACCTGG TCTTGTACAA CGACTGAAGA AAGACGATGA GTCAGCTTTA AGAGAACTTA TTACCCACCT CACTCCTACC CTGGTGTCGG ATGCGTTAGC AGTATTATCA GACCGCCAGG AGGCGGAGGA TGTGGTACAA AACGTATTGA TCAACTTCTG GCGGGTAAAA ATGAACCTCG CAAGTGATCT GGATTGCAGA GTGTATTTAC GCCGGGCCGT TCGGTACGTA AGCGTAGCGG CGGTTAGAAG CAAAATGGCA AGGAGCAAAC GGCATCAGCA TTATTTTTAT TCGAAAGACA AATTCTACGC CCGCCTGCCG TTGGAAAATA AAGAACTGTT GCAGCAAATT GTACAAGCCA TTGGCAGGTT ACCACCCGCC GTGCGGCATA GCTTTAGCGA CATGTATTTA CACGGTAAGA GCCATAAAGA AATCGCTACA GAACATAACA TCAGCCGGCA AACCGTGAAA AACAACATCT CACAGGCGTT GAAATTCCTT AGAGTTCACC TGAAGCATTT ATTGCAGTAG
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Protein sequence | MATPSLPIFI NQQPDFVKKN NNLYQPGLVQ RLKKDDESAL RELITHLTPT LVSDALAVLS DRQEAEDVVQ NVLINFWRVK MNLASDLDCR VYLRRAVRYV SVAAVRSKMA RSKRHQHYFY SKDKFYARLP LENKELLQQI VQAIGRLPPA VRHSFSDMYL HGKSHKEIAT EHNISRQTVK NNISQALKFL RVHLKHLLQ
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