Gene Cpin_3193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3193 
Symbol 
ID8359358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3936774 
End bp3938798 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content42% 
IMG OID644965365 
Productplasmid-related protein 
Protein accessionYP_003122861 
Protein GI256422208 
COG category[L] Replication, recombination and repair 
COG ID[COG3593] Predicted ATP-dependent endonuclease of the OLD family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0945381 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAT CCACATTAAC AATCAAAGGA TTTAAATCCT TTGGCCCGCA GGAAACCAGG 
ATCACGCTGC GCAAAAATCT CGCTGCCTTT ATTGGGCTAA ACAGTGCTGG CAAAACCAGC
GCGCTTGAAG CACTGAAGCG GCTATTCGGC TCTTCATTGG CAGAAAGGGA GATCTACAGA
GAAGATTTCC ATATTGGCAA GGATGAAAAT AGCGACGAAA TAACAGAAAG GGAGCTTTCT
ATCGAAGTAA GAATTGATTT TACGGAGGAG GAACAGGAAG CCGTGCCGCA CTTCTTTTCC
AATATGGTGG TAGACGATAT GGATATGGAT TTGTATATCC GTATCAGACT GGAAGCTACC
TGGAAAAAAT CGGACATGAC GCCTCAGGGA GAAATTGAGA TTAAAAACTA TTTCATTAAA
GTGCCGGAAG GCTCGACCGA ACAACCTGAT AGCAAACAAC CTTTCCCTAA TCATTTCAGG
AGCCTGATTC AAATTCTGTA TGTTCCCGCC ATCAGAAGAC CAGCCGAACA GCTGAAATAT
GCATCTGGCA CTATCCTCTA CCGGGTATTG AGAAAAATAA ACTGGAAGGA TGATTTTAAA
GAGGAGTTTG ATGCGAAGAT AGAAGAGATA AACGAAGCGT TTAAAGGCTT ACCAGAGTTC
GCCACCGTAC AAACGTCCAT TACAGGCTTT TGGCAGCAGT TTCATAAGGA TGAACGGTAC
AGAGATACGC AGATCGGATT TAGCGGAAGT GATTTTGAAA CGGTACTCAA ACGGCTGGAA
GTATCTTTTA ATCCTACAGG CACGCATAAA TCGTTTGGTA TAGATGAATT GGGTGAGGGT
TATCGTTCCA TGTTTTATCT CACCCTGGTA TGTTCCCTCC TGGATGTGGA AGAAAAGATG
GCTGACACTG AGGATGAAGA GTCGATCGGC GTCAACAGAC CGCTGCTTAC GATCCTGGCT
ATCGAAGAAC CCGAAAATCA TATTGCTCCG CAACTGCTGG GAAGGGTAAT TAAAATACTT
AAAACCATTG CAGAGAAGGA GAACTCACAG GTTGTATTGT CATCACATAC ACCTGCGATT
ATAAAACGGC TGGACCCGGA AAGTATTTTG CACTTCCGGA TCACAGAAAA CTATGAAACG
GAAGTAAATA AAATAAAACT TCCGGTAAAG AAAAGTGAGG CATATAAATA TGTGAAGGAA
GCGGTGCATA ATTATCCGGA AATTTATTTT GCCCGCCTGG TGGTTATCGG TGAAGGTGAT
AGCGAGGCTG TAATATTTAA CCGGCTGATG GAGGTGATGA ATGTTGATTT TGATGACAAC
ATAATCACGT TTGCGCCGCT GGGACACCGT TTTGTTAATC ACATCTGGAA ATTGTTGGAT
GCGTTGAAAA TTCCGCATAT TACGCTTCTC GACCTGGATA GGGAGAGAGA AGGTGGTGGA
TGGGGACGAG TTAAATATGC GATAGAACAG TTACTTGAAG TAAATGTTGA AAAGAAGGAC
CTGCTTGAAT TAAAAGATGG GTCAGTTCTG CCGGATGAAG ACTTTAGGAA AATGCACACA
TGGTCAATAA AGGATAAAGA TGATATCAAG AAACTGAACG ACTGGGTTAA TTCGCTTAAA
GAGTATAACA TCTTCTATTC AGTCCCTTTA GATCTGGATT TTTTAATGCT TACCCATTAT
ACTGATGCTT ATAAAAAAGC CATACCTAAG GGAGGTGGTC CCGAAATACC GGATAAAGAG
AAAAATGAGC AGGGATTTAA AGACAAAACT GAAGGTGCCG TAAAAGCTAC CTTAAAATCG
GAAAAGGCCA CTGGCTTTAC GTATTCACAG GCGGAGAAAG AACTGATGAT TTGGTATAAC
TATCATTTCC TTGGAAGAGG AAAGCCATCT ACACATATTG AGGTGCTATC GAATATGACC
GATGAGGAGA TTATTAAAGA TCTGCCCCCT GTATTTAATG ATGTTTTTAA TGCTATTTCT
TCCATCTTAA AACCAACTTC AAAGAATGAA AAGAGTAAAG CCTGA
 
Protein sequence
MKISTLTIKG FKSFGPQETR ITLRKNLAAF IGLNSAGKTS ALEALKRLFG SSLAEREIYR 
EDFHIGKDEN SDEITERELS IEVRIDFTEE EQEAVPHFFS NMVVDDMDMD LYIRIRLEAT
WKKSDMTPQG EIEIKNYFIK VPEGSTEQPD SKQPFPNHFR SLIQILYVPA IRRPAEQLKY
ASGTILYRVL RKINWKDDFK EEFDAKIEEI NEAFKGLPEF ATVQTSITGF WQQFHKDERY
RDTQIGFSGS DFETVLKRLE VSFNPTGTHK SFGIDELGEG YRSMFYLTLV CSLLDVEEKM
ADTEDEESIG VNRPLLTILA IEEPENHIAP QLLGRVIKIL KTIAEKENSQ VVLSSHTPAI
IKRLDPESIL HFRITENYET EVNKIKLPVK KSEAYKYVKE AVHNYPEIYF ARLVVIGEGD
SEAVIFNRLM EVMNVDFDDN IITFAPLGHR FVNHIWKLLD ALKIPHITLL DLDREREGGG
WGRVKYAIEQ LLEVNVEKKD LLELKDGSVL PDEDFRKMHT WSIKDKDDIK KLNDWVNSLK
EYNIFYSVPL DLDFLMLTHY TDAYKKAIPK GGGPEIPDKE KNEQGFKDKT EGAVKATLKS
EKATGFTYSQ AEKELMIWYN YHFLGRGKPS THIEVLSNMT DEEIIKDLPP VFNDVFNAIS
SILKPTSKNE KSKA