Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3193 |
Symbol | |
ID | 8359358 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 3936774 |
End bp | 3938798 |
Gene Length | 2025 bp |
Protein Length | 674 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644965365 |
Product | plasmid-related protein |
Protein accession | YP_003122861 |
Protein GI | 256422208 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0945381 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATAT CCACATTAAC AATCAAAGGA TTTAAATCCT TTGGCCCGCA GGAAACCAGG ATCACGCTGC GCAAAAATCT CGCTGCCTTT ATTGGGCTAA ACAGTGCTGG CAAAACCAGC GCGCTTGAAG CACTGAAGCG GCTATTCGGC TCTTCATTGG CAGAAAGGGA GATCTACAGA GAAGATTTCC ATATTGGCAA GGATGAAAAT AGCGACGAAA TAACAGAAAG GGAGCTTTCT ATCGAAGTAA GAATTGATTT TACGGAGGAG GAACAGGAAG CCGTGCCGCA CTTCTTTTCC AATATGGTGG TAGACGATAT GGATATGGAT TTGTATATCC GTATCAGACT GGAAGCTACC TGGAAAAAAT CGGACATGAC GCCTCAGGGA GAAATTGAGA TTAAAAACTA TTTCATTAAA GTGCCGGAAG GCTCGACCGA ACAACCTGAT AGCAAACAAC CTTTCCCTAA TCATTTCAGG AGCCTGATTC AAATTCTGTA TGTTCCCGCC ATCAGAAGAC CAGCCGAACA GCTGAAATAT GCATCTGGCA CTATCCTCTA CCGGGTATTG AGAAAAATAA ACTGGAAGGA TGATTTTAAA GAGGAGTTTG ATGCGAAGAT AGAAGAGATA AACGAAGCGT TTAAAGGCTT ACCAGAGTTC GCCACCGTAC AAACGTCCAT TACAGGCTTT TGGCAGCAGT TTCATAAGGA TGAACGGTAC AGAGATACGC AGATCGGATT TAGCGGAAGT GATTTTGAAA CGGTACTCAA ACGGCTGGAA GTATCTTTTA ATCCTACAGG CACGCATAAA TCGTTTGGTA TAGATGAATT GGGTGAGGGT TATCGTTCCA TGTTTTATCT CACCCTGGTA TGTTCCCTCC TGGATGTGGA AGAAAAGATG GCTGACACTG AGGATGAAGA GTCGATCGGC GTCAACAGAC CGCTGCTTAC GATCCTGGCT ATCGAAGAAC CCGAAAATCA TATTGCTCCG CAACTGCTGG GAAGGGTAAT TAAAATACTT AAAACCATTG CAGAGAAGGA GAACTCACAG GTTGTATTGT CATCACATAC ACCTGCGATT ATAAAACGGC TGGACCCGGA AAGTATTTTG CACTTCCGGA TCACAGAAAA CTATGAAACG GAAGTAAATA AAATAAAACT TCCGGTAAAG AAAAGTGAGG CATATAAATA TGTGAAGGAA GCGGTGCATA ATTATCCGGA AATTTATTTT GCCCGCCTGG TGGTTATCGG TGAAGGTGAT AGCGAGGCTG TAATATTTAA CCGGCTGATG GAGGTGATGA ATGTTGATTT TGATGACAAC ATAATCACGT TTGCGCCGCT GGGACACCGT TTTGTTAATC ACATCTGGAA ATTGTTGGAT GCGTTGAAAA TTCCGCATAT TACGCTTCTC GACCTGGATA GGGAGAGAGA AGGTGGTGGA TGGGGACGAG TTAAATATGC GATAGAACAG TTACTTGAAG TAAATGTTGA AAAGAAGGAC CTGCTTGAAT TAAAAGATGG GTCAGTTCTG CCGGATGAAG ACTTTAGGAA AATGCACACA TGGTCAATAA AGGATAAAGA TGATATCAAG AAACTGAACG ACTGGGTTAA TTCGCTTAAA GAGTATAACA TCTTCTATTC AGTCCCTTTA GATCTGGATT TTTTAATGCT TACCCATTAT ACTGATGCTT ATAAAAAAGC CATACCTAAG GGAGGTGGTC CCGAAATACC GGATAAAGAG AAAAATGAGC AGGGATTTAA AGACAAAACT GAAGGTGCCG TAAAAGCTAC CTTAAAATCG GAAAAGGCCA CTGGCTTTAC GTATTCACAG GCGGAGAAAG AACTGATGAT TTGGTATAAC TATCATTTCC TTGGAAGAGG AAAGCCATCT ACACATATTG AGGTGCTATC GAATATGACC GATGAGGAGA TTATTAAAGA TCTGCCCCCT GTATTTAATG ATGTTTTTAA TGCTATTTCT TCCATCTTAA AACCAACTTC AAAGAATGAA AAGAGTAAAG CCTGA
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Protein sequence | MKISTLTIKG FKSFGPQETR ITLRKNLAAF IGLNSAGKTS ALEALKRLFG SSLAEREIYR EDFHIGKDEN SDEITERELS IEVRIDFTEE EQEAVPHFFS NMVVDDMDMD LYIRIRLEAT WKKSDMTPQG EIEIKNYFIK VPEGSTEQPD SKQPFPNHFR SLIQILYVPA IRRPAEQLKY ASGTILYRVL RKINWKDDFK EEFDAKIEEI NEAFKGLPEF ATVQTSITGF WQQFHKDERY RDTQIGFSGS DFETVLKRLE VSFNPTGTHK SFGIDELGEG YRSMFYLTLV CSLLDVEEKM ADTEDEESIG VNRPLLTILA IEEPENHIAP QLLGRVIKIL KTIAEKENSQ VVLSSHTPAI IKRLDPESIL HFRITENYET EVNKIKLPVK KSEAYKYVKE AVHNYPEIYF ARLVVIGEGD SEAVIFNRLM EVMNVDFDDN IITFAPLGHR FVNHIWKLLD ALKIPHITLL DLDREREGGG WGRVKYAIEQ LLEVNVEKKD LLELKDGSVL PDEDFRKMHT WSIKDKDDIK KLNDWVNSLK EYNIFYSVPL DLDFLMLTHY TDAYKKAIPK GGGPEIPDKE KNEQGFKDKT EGAVKATLKS EKATGFTYSQ AEKELMIWYN YHFLGRGKPS THIEVLSNMT DEEIIKDLPP VFNDVFNAIS SILKPTSKNE KSKA
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