| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3056 |
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| Symbol | |
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| ID | 8359221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3774990 |
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| End bp | 3776621 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644965234 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003122730 |
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| Protein GI | 256422077 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCA TCTCCCTGTC TGTCAAACGC TGCCGTTTTC ATTTTGGTTC GATTTATGTA
GTTAGTGGAC GTTCGATTTT GTTAACCCAA GCTATACGTC GTATGAAATA CATACCGCTC
AAACTAGTAA GAAATATATC AGGACTTTTA CTGCTGACTA CAACAATGGC TTACGGCCAG
ACAGATTCAT TATTGGTGCA TAGCAGATCA ACTGCGTATT ATGCTGAGGG AAAGAGCTAC
CTCAAAGAGA AGGATTATAA TGCCGCCATT CAGAGTTTTA CAGCGGCGAT CGCCATTCAT
CCCACTGACT CCGCATATGC AAACCTTGGA TTTGCCTATA TCCGGAAGGA GAATGATAAA
AATGCATTTG TTGCCCTGAA TAAGGCGCTT GATCTCAATG GAAACTATGC CTGGGCTTAT
TGTCTCCGGG GATATCTTTA TACGAAAATT AACGTCCCGG AATTATCTTT TAATGACTTC
TCAAGGGCCA TTGCACTAAA TGCAAAAGGA GGGGATTTGT CCGGCGCTCA GAATGCGGTA
TCAGATAAAT CGGTGATCCG GGATTATACG AAGAAAATAG GAAAGGATCC TAAGGATGAT
AGTGCTTATT TACAACGGGC GCGCGCCTAT GAGAGCCGGG AGAAAAATAA ACAGGCGGTA
AAGGATTATA AGAAAGCAAT CGCACTCGAT CCGGATAATA CAGAAGCCTA TTACGGTCTG
CAAAATCTTT ATCTGCAGGG GAAAGGACCT AAACAAAGTT CAGCTCCTGC TGATGATATC
TCGGATACGA CGGAACAGTA TATAGAAGAA CAACCGTTCA CAGAATTCTA TGCTACCCAG
GGTACAACTT ATTCAACGCT TGAAGAAAAG TATGCATTGA CGATTCGTGA TTATACAAAA
GTGATTACGC TGTTTCCCGG GAACAGCGCT GCTTTTCGGG ATCGCGGCTA CCTGTATGCA
AAACTTAATA AGACAGACTC CGCTATTGCT GACTTTACAA GCGCAATCAC ACTCGATCCG
CAGTCATCGC TTGCATTGGG TTACCGGGGT GCATTGTATA TAGAAACAAA GCAACTGGAA
TCAGCAATCG CTGATTTGTC AGCCGCGATT AAAATCGACC CGGATGCTTT GCAGCACTAT
TATAATCGTG GGCTGGCCTA CTACCAGTGG GGCGCATATG AACCGGCTAT AGCAGATTTT
ACTACCTTAA TCACCAAAGG TCCGCCTAAT GCAGTTGCCT ATCGCTACCG GGGGAATCTT
TATACATACG TCAATAAGCC TGCATTAGCC ATTGCTGATA TCAGCAAGGC GATCGATCTG
GCGCCAAAAG AAGCAGAAAG TTATGCGGTT CGCGGACTGG CCTATGCTTT ACAAGCAGAT
TATAAACAGG CCGTCCAGGA TTTTAGCACT TCCATCAAAC TGGATCCTGG CAGTAAGACG
ATATATGTTA ATCGCGCATT GGCGTATAAG TACCTGAACA ATTATAAGGC GGCTATTAAA
GATTATACCC AGGCGATTGA GCTGGACCCG AATGATGTGG ACGTATATAA GGAACGGGGC
AAGGTGTATG AGCAGATGGG AAAAAAAGAC CTGGCAGCCG CTGATTTTAA GAAGGCAGGA
GCGGTGGAAT GA
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| Protein sequence | MDIISLSVKR CRFHFGSIYV VSGRSILLTQ AIRRMKYIPL KLVRNISGLL LLTTTMAYGQ
TDSLLVHSRS TAYYAEGKSY LKEKDYNAAI QSFTAAIAIH PTDSAYANLG FAYIRKENDK
NAFVALNKAL DLNGNYAWAY CLRGYLYTKI NVPELSFNDF SRAIALNAKG GDLSGAQNAV
SDKSVIRDYT KKIGKDPKDD SAYLQRARAY ESREKNKQAV KDYKKAIALD PDNTEAYYGL
QNLYLQGKGP KQSSAPADDI SDTTEQYIEE QPFTEFYATQ GTTYSTLEEK YALTIRDYTK
VITLFPGNSA AFRDRGYLYA KLNKTDSAIA DFTSAITLDP QSSLALGYRG ALYIETKQLE
SAIADLSAAI KIDPDALQHY YNRGLAYYQW GAYEPAIADF TTLITKGPPN AVAYRYRGNL
YTYVNKPALA IADISKAIDL APKEAESYAV RGLAYALQAD YKQAVQDFST SIKLDPGSKT
IYVNRALAYK YLNNYKAAIK DYTQAIELDP NDVDVYKERG KVYEQMGKKD LAAADFKKAG
AVE
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