Gene Cpin_2908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2908 
Symbol 
ID8359070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3587058 
End bp3587798 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content45% 
IMG OID644965089 
Producthistidine kinase 
Protein accessionYP_003122588 
Protein GI256421935 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.108136 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGACA AAATATTTTA TATCACCATA TTTATCTCGC TGCTGATAGC CATCATCATT 
CTGTTTTTCG TCATCTCTAT TGTCTTGTAT CATCGCCGGT ACATACAGCT GCAACGCGAA
CGTATCGTTG CGGAAATTAC CATCCTGGAG AATGAAAGGA AAAGGATTGC CGCTGACCTG
CATGACAGCA TGGGCCCTTT ATTATCTACT ATCAAACTCA ATATTCATAG TATCGAGGTG
ACAGATGAAA GGGACCATCA GATCATTGTC CGCTCTTCCG GTTATATCGA TGAGGTGATC
AAAGGACTGA GGCAGATATC ACACAACCTG CTGCCAGCGA CACTTGAGCG TAAGGGGCTT
ACGGAGGCGT TACATGAATT CATCCGCCAG TTGTCAGGTA AACAGGATCT TGAAATTAAG
TTTCATACTT CCGGAAAGAT CGACATTGCG CCTGAAAAAC AGATCCATAT CTTCCGTATT
ATACAGGAGA TCACGCACAA TACCCTGAAA CACGCCAAAG CCACACAATT ACAGATTGTG
CTGACGAGAG AAAACGGATT CTACCTTGTA CTGGTGAAGG AGAACGGGAT CGGGTTTGAT
GTAAAAAAAG CCAGAAATGA ATCTGCCGGA CTTGGTATGA AAAGTCTGGC GATCCGTACA
GACATCCTTC GGGGCTCACT GTCTATCGAT TCTGTACCGG GCCAGGGTAC CAACTATTTC
GTAAAAATTC CGGTGGGATA A
 
Protein sequence
MDDKIFYITI FISLLIAIII LFFVISIVLY HRRYIQLQRE RIVAEITILE NERKRIAADL 
HDSMGPLLST IKLNIHSIEV TDERDHQIIV RSSGYIDEVI KGLRQISHNL LPATLERKGL
TEALHEFIRQ LSGKQDLEIK FHTSGKIDIA PEKQIHIFRI IQEITHNTLK HAKATQLQIV
LTRENGFYLV LVKENGIGFD VKKARNESAG LGMKSLAIRT DILRGSLSID SVPGQGTNYF
VKIPVG