Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2830 |
Symbol | |
ID | 8358991 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 3486810 |
End bp | 3488174 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644965010 |
Product | secretion protein HlyD |
Protein accession | YP_003122510 |
Protein GI | 256421857 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000458855 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGAAAT TAGCACATAG CAGCTTACAC GATAAGCAGA TAGAAACACT GGCGACACAG TCACAGTCAG AATTGATCAA GGTAAAGGGT TCGCGTATAC TGGGCAGGAT CATCACCGTT TGCCTCATCC TGCTGATCAT TATTTTATTC CTGCCCTGGC GGCAGACGAT CCCTGGTAAA GGGACGGTAA CAGCGTTAAG ACCAGAAGAC AGGCCACAAA CAGTACAGAA CCAGATTGGG GGACGTATCG AGCGTTGGGC CGTAAGAGAA GGACAGGAAG TGAAGAAAGG AGATACCATA CTCGTGATAT CAGAGACCAG CCAGTCCTAT TTTGACCCGG AACTGCCTTT GCGACTGGAT GAACAGCTGG AAGCAAAGAA GGGCAGCGAA GCAGCCGCCT TACAGAAGAT GGATGCAACC AATGCACAGA TACAGGCGCT GGGTAGCGGA CTGCGTTATC AGTTATCGGC TGCTGAAAAT AAAGTACATC AGTCCGAAAA CTATGTCAAG ATAGACAGCG CTGATCTCGT GGCGGTACAG AACTTTTATG AGACATCGAA AGCGCGTTTA CAGCGTTATG AGTCGGGGTA TAAAAACGGA TTGTTCTCCC TTACGGATAT AGAAACCCGT CGCCTGAAAT TACAGGAAGA CCAGGCTAAG GTGATCGGAC AACAAAACAA GCTTAATAAC TCGAAGCAGG CCTTGTTAAA TGCTCTTATC GACCTGGATA ATATTAAAGC CAAGTACCAG GAATCCCTGG CAAAAGCACA ATCTGATATG AGTTCGGCTT TATCCAGCCG TGCGAGTGTA CGCGGAGAGA TCGCTAAGCT GCGGAATGAT ATCTCCAATA TATCTATACG TCGTGCGCTA TACATTGTGC GTGCCCCACA GGATGGATTT GTGGTAAAGA CGCTGAAGGC TGGTATTGGT GAGAACATTA AAGAAGGGGA ATCCATCGCC ACACTGCAAC CCCTGCATCC GCAGGTAGCA GCTGAACTAT ATGTAAACGC GATGGACGTA CCGCTGATCC TCGATACCAG CGATGTACGA CTCCAGTTTG AAGGATGGCC TTCGGTACAG TTCTCTGGCT GGCCTTCTGT AGCGGTAGGT ACTTTCGCCG GTAAGGTATG GGCGATCGAC CGTGTGAGCA GTAATGGCGG TAAATACCGT CTGCTGATAA AACAGACGGC GCCGGTACCG GAGAATGACG AACCATGGCC TATACAGCTC AGACAGGGCT CTGGCGTATA TGGTCGTATT ATTCTCCGCT CAGTACCCTT ATGGTATGAG ATCTGGCGAC AGCTGAACGG CTTCCCGCCA AGTCTGGAGA AAGAACCTTC TGAGAAAGAG TCTGGAAAGA AATGA
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Protein sequence | MGKLAHSSLH DKQIETLATQ SQSELIKVKG SRILGRIITV CLILLIIILF LPWRQTIPGK GTVTALRPED RPQTVQNQIG GRIERWAVRE GQEVKKGDTI LVISETSQSY FDPELPLRLD EQLEAKKGSE AAALQKMDAT NAQIQALGSG LRYQLSAAEN KVHQSENYVK IDSADLVAVQ NFYETSKARL QRYESGYKNG LFSLTDIETR RLKLQEDQAK VIGQQNKLNN SKQALLNALI DLDNIKAKYQ ESLAKAQSDM SSALSSRASV RGEIAKLRND ISNISIRRAL YIVRAPQDGF VVKTLKAGIG ENIKEGESIA TLQPLHPQVA AELYVNAMDV PLILDTSDVR LQFEGWPSVQ FSGWPSVAVG TFAGKVWAID RVSSNGGKYR LLIKQTAPVP ENDEPWPIQL RQGSGVYGRI ILRSVPLWYE IWRQLNGFPP SLEKEPSEKE SGKK
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