Gene Cpin_2673 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2673 
Symbol 
ID8358833 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3269369 
End bp3269950 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content43% 
IMG OID644964855 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003122356 
Protein GI256421703 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTGAACG AATACACACA TAATGATACC GACCAGGAAC TGCTCAGTCT TATCAAAACA 
GGGTCAGAAA TAGCATTTCA GCAATTATTT CAACGACATT GGGAAAAGCT GTTCGTATCC
GCCAGTAAGA AACTGGGCGA CCAGGAACTG GCGCAGGAAC TTGTGCATGA CTTGTTCCTG
GATCTCTGGC GACGCAGGGA AGAACTTGCA ATAGTGAATC TTCCGGCATA CCTCGGAAAG
GCCCTCCAAT ACCGCATTAT CAATAAACTG ATTTCTAAAA AAGATAAGTT CTTCTTTGAG
TTACTGGAAA ATACAGAAGA ATCGCTTTAC AAAGCAGATC AGGCCCTGCT GGAAAAAGAC
CTGACTGCTC TGATCATATC GTGGGCAGAA ATACTGCCGG AAAGACGGCG TCAGATATTT
ATACAATATT ATCTCCACCA CCTCACTACC CTTGAAATTG CCGATAATCT CAGGATATCC
CAGAAAACGG TACAAAACCA GCTTAGCATC TCTATACAGG ATTTAAAGGC ACATTTCGGC
CATTTGCTTA TACTTCTGGT CCTGCTGGAC GAAACTTTGT AA
 
Protein sequence
MVNEYTHNDT DQELLSLIKT GSEIAFQQLF QRHWEKLFVS ASKKLGDQEL AQELVHDLFL 
DLWRRREELA IVNLPAYLGK ALQYRIINKL ISKKDKFFFE LLENTEESLY KADQALLEKD
LTALIISWAE ILPERRRQIF IQYYLHHLTT LEIADNLRIS QKTVQNQLSI SIQDLKAHFG
HLLILLVLLD ETL