| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2588 |
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| Symbol | |
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| ID | 8358748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 3171806 |
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| End bp | 3174253 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644964771 |
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| Product | PKD domain containing protein |
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| Protein accession | YP_003122272 |
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| Protein GI | 256421619 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0382453 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGCA TCTTTACTAT TACCCTATTA TTGTCCATCT ATACCAGCAC GCAGTTAATG
TATGCACAAA CCTTTACACC GATCACCGTA ACGGGTTATA ATGCAGACAT TGTAGCAGAA
GCAGGTACTG ATGCGGTGGC GGTAACGTCT ACCGTGATTG ATGGCAGCAA CCACATATTG
TATACCCAGT CATTCGCAGC TACCAATGGT ATCGACGGTG GCATCGTTGA CAATGGTACT
TTCGTCAGCG GTACCCGTAC TTACCAGATG AACCCTTACA CGGCTCCGAA TGGCTTATAC
CTGTCCGCCA GCGGCAATGT AGCCAACTCC CTGGCGGCAG GCACACTGAC GCTGGCTACA
CCGGCGATGT ACAGTAACCT GAGTATCCTG GCTTTTGGTA CAGAGAATAA CAGTACTGTC
ATTGTCACCC TCAATTATAC GGATGGTACA TCCTCCAATG CCGGTACGCT GCAGATCAAG
GACTGGTTCT TCGGAACACC TTTTATCTTC AGTGGGATGG GGCGTCTCAC CCGGACAGCC
ACTTTTCCGA CAGTAGACGG ATTGCCGAGC GAGCCCCGTA TGTATTCCTT TGATTTCAAC
ATCCCCTGTG CAGATCAGTC TAAGCTGGTG AGCTCTGTTT CATTCCTGTA TGTACAGGGA
CCGAATATCA GTTCGCGGGC ACTGATTGTT GGTCTGTCAG GTGTATCCTT TACACCGCTG
ACCTACACCA GCACCAAAAC AGATGCTGTC TGCGGAGGAG CCAGCGGCAG TATTGCCGTT
ACGGCAACCG GCGGCACACA ACCACTCTCC TACAGCTGGA GTACTACACC AGTGCAGACC
ACGCCTACAG CGACCGGACT GGCAGGTGGC ACTTATACCC TGGCTATCAG AGATGCTAAT
AACTGTGTGA CCAATGTGAC GGAAACCGTG GCTATGTTGT CTACTACCAC CTTGACCGCA
ACGGCTATGC CAACACAGAT CTGTGCCGGT GAGACATCGA CACTCAGCGT GACTGCCAGC
GGCGGGACGG TCAGCAACTA TTCCTGGACA CCGGGCAATG GGACCGGGAG CAGTATAACT
GTTACACCAA CGGACACCAC TTCTTATATC GTATCCGCAC AGGATGGATT GGGTTGTACA
GTCAGAGATA CCGTGGAAGT AGCGGTTAAA CCTACACCTG TTGCTGCCTT CAGCGTATTG
CCAGATACAG TTTGCCTGGG AACGGGTAAT ACGCTGACGT TTAGGGGTAA CGCAGGACCG
GGCGCCACCT ACAACTGGCA CAACTTTGCC GGCGCGACGG TACAAAACGG TACGGGAGCA
GGTCCTTATG ATATCCGTTT CAATGCAGCA GGGCAATACC CGATACAATT ACAGATCACT
GAAGACGGTT GCGTGTCAGC AATGGCCACG CATGATATTG TGGTGTCACA ACCACCTGTT
GCTTCGTTTA CTGTCAGCAA AACGCCCATC TGCGCGGGGG AATCCATCAC CATTACTTCT
ACCGGCAGCA ATGGTCCGAA TGCAGTGCCT ACCTGGAACT GGGGAGGTGG CGCCATAAGA
AGCGGCAGTG GGTTTGGTCC ATATTCAATC ACTTATGAGC GGAATGGCAC CATTACTTTT
TCCATCAAAG ACGGTGTATG TGCTGATACG GCAGTACCGG TAGCTATTAC TGCGATACCG
GTACCTGTAC CTGATTTCTC AACCGATCTG ACGACAGGTT GTGCGCCACA GGAGATCAGC
TTCACCAATC TGTCACAGCT GGCCGATAGT TACACCTGGT CACTGGGTAA TGGTACACAG
ACTACTGAAG AAGACCCTGT TGGCAACTAT ACAGCGCCTG GTACCTATAC GGTTTCACTG
ACTGCCAGCG CCCAGGGATT GTGTACAAAG ACCATTACAA AGACAGCCCT GATCAACATA
CTGACACCAC CTGTAGCAGC TTTCAGTGCT GCCCCGGGAG AAAATGTACC CGTAGAATTT
AAGAATGGCT CCTTTACGTT CAATAACACC TCTGAATTTG CAGTGAACTA CAGCTGGGAT
TTCGGAGATG GCAATTCCGC CGATACAGAA GACGCACAGC ACAAATATGA ATTACCCGGC
AGCTACAGAG TAACCCTTTA CGCAGCAAAT GAGATCGGCT GTACTGACAG CATCAGTCAT
GCATGGTACA TCGTAACGCC TGACCTGGTA CTGGAAATTC CGAATGTATT TAGTCCGAAT
GGAGACGGGA TCAACGACAC CTGGAGCATC GACGGTCTGA AAGCAAGGCC AATGGCTACA
ACAGAAATCT ATAACCGCTG GGGCCAGATC GTATTTACGG GCATCGGTTA TACCCCATGG
GATGGCACCA GACGTGGTCA GCCGCTACCA GTGGGTACTT ATTATTATGT CATCAAAACA
TCGGCAGACG AGAAGCCCTA CACAGGATGG GTGGCGCTGC TACGGTAA
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| Protein sequence | MKRIFTITLL LSIYTSTQLM YAQTFTPITV TGYNADIVAE AGTDAVAVTS TVIDGSNHIL
YTQSFAATNG IDGGIVDNGT FVSGTRTYQM NPYTAPNGLY LSASGNVANS LAAGTLTLAT
PAMYSNLSIL AFGTENNSTV IVTLNYTDGT SSNAGTLQIK DWFFGTPFIF SGMGRLTRTA
TFPTVDGLPS EPRMYSFDFN IPCADQSKLV SSVSFLYVQG PNISSRALIV GLSGVSFTPL
TYTSTKTDAV CGGASGSIAV TATGGTQPLS YSWSTTPVQT TPTATGLAGG TYTLAIRDAN
NCVTNVTETV AMLSTTTLTA TAMPTQICAG ETSTLSVTAS GGTVSNYSWT PGNGTGSSIT
VTPTDTTSYI VSAQDGLGCT VRDTVEVAVK PTPVAAFSVL PDTVCLGTGN TLTFRGNAGP
GATYNWHNFA GATVQNGTGA GPYDIRFNAA GQYPIQLQIT EDGCVSAMAT HDIVVSQPPV
ASFTVSKTPI CAGESITITS TGSNGPNAVP TWNWGGGAIR SGSGFGPYSI TYERNGTITF
SIKDGVCADT AVPVAITAIP VPVPDFSTDL TTGCAPQEIS FTNLSQLADS YTWSLGNGTQ
TTEEDPVGNY TAPGTYTVSL TASAQGLCTK TITKTALINI LTPPVAAFSA APGENVPVEF
KNGSFTFNNT SEFAVNYSWD FGDGNSADTE DAQHKYELPG SYRVTLYAAN EIGCTDSISH
AWYIVTPDLV LEIPNVFSPN GDGINDTWSI DGLKARPMAT TEIYNRWGQI VFTGIGYTPW
DGTRRGQPLP VGTYYYVIKT SADEKPYTGW VALLR
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