Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2576 |
Symbol | |
ID | 8358736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 3152090 |
End bp | 3154222 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644964759 |
Product | glycogen debranching enzyme GlgX |
Protein accession | YP_003122260 |
Protein GI | 256421607 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.677524 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.165671 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCAGA CTGTAGTATA TCCTGGAAGT CCCTATCCGT TAGGGGCCAC CTGGGACGGA AAAGGAGTAA ATTTTGCCCT CTATGCAGAT AATGCAACCG GTGTTGAACT CTGCCTCTTT AATACAACCG CTGACGAGGC AGAAGCCGTT AAGATAAAAA TCAAGGAACG TTCTCACCAG GTATGGCACT GTTACATACC TGACATAAAA CCCGGCCAGC TGTACGGTTA CCGCGTACAT GGTCCTTATG AACCACAAAA CGGTCATCGC TTCAACGCAA AGAAATTATT GATAGATCCA TACGCCAAAG CAATCGCAGG CACCATCGAC TGGAGTGATG CCCTGTTTGG ATATAAAATG GGTGATCCTG AAGAGGATCT CAGCTTCAGC GATGTAGATA GCGTACCCTT TATTCCAAAA AGTGTAGTGA TTGATCAGTC TTTTGACTGG GAAGGCGACC GTGCTCCCAA GATCGCATAT AATGAGTCCA TTATCTACGA GGCACATGTC AAAGGCTTTA CAAAGCTGCA TCCCGATGTT CCGGAAGATA TCCGGGGGAC TTATGCCGGT ATGGCCCATC CGGTGACTGT TAATTACCTG AAGGAACTGG GTATTACGGC TATCGAATTA ATGCCTGTTC ATCACTTTGT AGCGGACAGA CACCTGGTAG ACCGAGGACT GACGAACTAC TGGGGCTATA ATACCATAGG CTTTTTTGCA CCGGATGCCC GCTATGCAGC GGGCGGCGTA TTGGGAGAAC AGGTCACCGA ATTCAAGCAA TTGGTTAAAA CGCTGCACCA GGCAGGTATC GAAGTGATCC TGGATGTGGT GTACAATCAT ACAGGTGAAG GAAACCAAAT GGGGCCGACT TTGTCTTTCC GGGGAATAGA CAACGCGTCT TACTATCGCC TGACGGAAGA CAAACGCTAC TACATGGACT ATACCGGTAC CGGGAATACC TTGAACGCGT ACCTGCCCAA CGTACTGCGC CTGATGATGG ACAGTCTGCG TTACTGGATC CAGGAAATGC ACGTAGACGG CTTCCGCTTT GACCTGGCCT CCACATTAGC CCGTGAACTC CATGAAGTAA ATACACTGAG CGCCTTCTTT GACATCGTCT ACCAGGATCC GGTAATCTCC CAGGTGAAAT TGATCGCAGA ACCCTGGGAT ATTGGTGAAG GTGGCTACCA GGTAGGAAAA TTTCCACCCG GCTGGGCAGA ATGGAATGGT AAATACCGTG ATTGCATCCG TGACTACTGG AGAGGGGCCG ATAGTATGCT GGGCGAATTT GCCGAACGTT TTACCGGTAG CTCTGATCTG TATAAGAATG ACTATCGTAG TCCTACGGCC AGTATCAACT TCGTAACAGC TCACGATGGT TTTACCCTGC GGGATCTGGT ATCCTACAAC GACAAACATA ACGAGGCCAA TCTCGACGAC AACCGGGATG GGGATGAGCA TAACCGTTCC TGGAATTGCG GCGCTGAAGG AGCTACGGAT GATGAGGGGG TACTGGCATT GAGAAGCCGC CAGCAACGTA ATTTCTTTGC AACACTCCTC TTGTCACAAG GGGTACCGAT GATAGTCGCA GGGGATGAAC TGGGCCGTAC GCAAAAAGGG AACAACAACT GCTATTGCCA GGATAATGAG TTATCGTGGG TGAATTGGCA GCAGATCGAT AATGGGCTCC TGCAGTTCAC CCGGCAACTG ATAGCACTGA GGAGGGCACA CCCTGCCTTC TGTCGCAGAC GCTGGTTCCA GGGACAACCA ATCAAAGGAA TAGGGCTGGA AGATATTGCC TGGTTCCTGC CGGATGGCTC GGAAATGTCA GATGAACACT GGAGTCACGA CTTTGCAAAG TCGATGGCTG TCTTTTTTAA CGGTAAAGGA CTACATAATA GCGGACCAAA GGGAGAGCAG ATCGTGGATG ATAGCTTTTA TATCATTTTC AATGCACATT ATGAACCGCT GGACTTCACC CTGCCGCTGG AAAAGTATGG TCATACCTGG ACAAAGGTCC TCGATACCCG TGATCTTCAG ATCACGGAAC GGGAAGAAGT ATTAAAAGCA GAAGAGACGA TTAATGTGGA TGCCCGCTCT GTTATGGTGC TTCGCCATAA ACTGATGCAC TAG
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Protein sequence | MNQTVVYPGS PYPLGATWDG KGVNFALYAD NATGVELCLF NTTADEAEAV KIKIKERSHQ VWHCYIPDIK PGQLYGYRVH GPYEPQNGHR FNAKKLLIDP YAKAIAGTID WSDALFGYKM GDPEEDLSFS DVDSVPFIPK SVVIDQSFDW EGDRAPKIAY NESIIYEAHV KGFTKLHPDV PEDIRGTYAG MAHPVTVNYL KELGITAIEL MPVHHFVADR HLVDRGLTNY WGYNTIGFFA PDARYAAGGV LGEQVTEFKQ LVKTLHQAGI EVILDVVYNH TGEGNQMGPT LSFRGIDNAS YYRLTEDKRY YMDYTGTGNT LNAYLPNVLR LMMDSLRYWI QEMHVDGFRF DLASTLAREL HEVNTLSAFF DIVYQDPVIS QVKLIAEPWD IGEGGYQVGK FPPGWAEWNG KYRDCIRDYW RGADSMLGEF AERFTGSSDL YKNDYRSPTA SINFVTAHDG FTLRDLVSYN DKHNEANLDD NRDGDEHNRS WNCGAEGATD DEGVLALRSR QQRNFFATLL LSQGVPMIVA GDELGRTQKG NNNCYCQDNE LSWVNWQQID NGLLQFTRQL IALRRAHPAF CRRRWFQGQP IKGIGLEDIA WFLPDGSEMS DEHWSHDFAK SMAVFFNGKG LHNSGPKGEQ IVDDSFYIIF NAHYEPLDFT LPLEKYGHTW TKVLDTRDLQ ITEREEVLKA EETINVDARS VMVLRHKLMH
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