| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2483 |
|---|
| Symbol | |
|---|
| ID | 8358641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3057263 |
|---|
| End bp | 3058777 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644964669 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003122172 |
|---|
| Protein GI | 256421519 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.35671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAAT CAGCTTCTTT TACCGGATAT GGCTTTCGCC ATGCATGTAT CACCCTTATA
GCTTTTATTT GTGTCCTGGT GGCAGTTATG AATTGCACCG TAACAAATGT GGCGTTTAAC
GAGATAAGGG GCAACCTGGG TGTCTCGCTG GATGAAGTCA GCTGGGTAAC GACTGTATAT
GTACTCGCCT ATATAGCTAT TATCCCTTTC AGCAACTGGC TTTCCCGGAA ACTGGGTAAC
AAGAAATACC TCATTATCAC ACTTATCCTG TTTATCGTTT CTTCCTTTCT CTGTGGCAAC
GCTACCAGTA TAGAAGAACT GTTAATTTTG CGTTTTTTAC AGGGATTAGG TGGAGGCGCT
ATGCTGGTAT TGTCACATAC AATGATCCTG GAAAACTGGC CGCCGCAAAG ACGGACTACT
GCCCAGGCAT TTTTTATATT GGGTATGTTG GGTGGAAATA TGCTGGCTGC GCCTTTTGGT
GGATATATAA CAGACAATTA CACCTGGTCT TATATTTTTT ATCCGAATAT ACTGGTGGGT
ATCCTGCTGT GTATACTGGT CCTTGTTTTT GTAGAAAACA AACGATATCA GCAACGGGAA
GACTGGCTGG GAACGATCAT GGTGAGCATC GGAGCATCCT GCCTATATCT GGCGCTGACA
AGAGGACAGC AGGAAGAGTG GTTTAAGAGC CCCTTTATCA TTGTTCTGCT GCTATGTGGA
TTGGTGGGGC TCGTTATTTT TATCCGCAGA GAATTAGAAT GGATCACCCC ACAGGGAGAG
AATGGTTTAT TGCGGAATGT GAGTCTGCGT AATGGTCTGA TATTAGCATT CGTTGCCGCC
TTGGGTATAG CCGCTTCCTC TTCTACGATA ACAATTCCGC TCCGATGGCA CGCACAATTG
CCAAAGATAT CCCCCTGGCT GGTGATTGTT TGTATTATTT TGGTAATGGC CCTGATCACG
ATCCTCATAG AAGAAAAGAA GGCCCTGAAA TACATATTGG CAGCAGGTCC GATCCTGTTG
ATTATTTATA ACTATATGGT ATTCCAGCAG CCGGTAGCAC CGAAGTATAC CACCTACATA
TACTATCTGC TGGCTGTACG GATACTGGCT GTCATATTGT TGTCCATATC AGTAAGCACA
TTCGTCTTCT CAAAACTGGA AAATAAAGAA ATCGGCCCCG GGGTACGCAT GTATCACCTC
GTACAGCAAC TGGGTTTAGC CCTTGGTATT GCGTTATTTT CTGCATTTAC CTACAAAGCG
CCGGAACCAG ATTACACAAG GTTCTTAGGA CACCTGGACC TGAAAGACCC GGTAGTACAA
AAGGCGATCA GGGAGAGTAC TACCTCCTTA GATCAGGTAC GTGCTGAAGC ATTCGTTAGA
CAGGCGCATG ATACGCAGGT TGGCGTGGTG AAAGCCAACT TTATGCTTAT GATAATTGCG
GGCATTATTT TAACGGTACT TATCTTTTCA GTGCGGCAGC GGATTAAAAT CAATTCAAAA
AACGACAGCA AATAA
|
|---|
| Protein sequence | MEKSASFTGY GFRHACITLI AFICVLVAVM NCTVTNVAFN EIRGNLGVSL DEVSWVTTVY
VLAYIAIIPF SNWLSRKLGN KKYLIITLIL FIVSSFLCGN ATSIEELLIL RFLQGLGGGA
MLVLSHTMIL ENWPPQRRTT AQAFFILGML GGNMLAAPFG GYITDNYTWS YIFYPNILVG
ILLCILVLVF VENKRYQQRE DWLGTIMVSI GASCLYLALT RGQQEEWFKS PFIIVLLLCG
LVGLVIFIRR ELEWITPQGE NGLLRNVSLR NGLILAFVAA LGIAASSSTI TIPLRWHAQL
PKISPWLVIV CIILVMALIT ILIEEKKALK YILAAGPILL IIYNYMVFQQ PVAPKYTTYI
YYLLAVRILA VILLSISVST FVFSKLENKE IGPGVRMYHL VQQLGLALGI ALFSAFTYKA
PEPDYTRFLG HLDLKDPVVQ KAIRESTTSL DQVRAEAFVR QAHDTQVGVV KANFMLMIIA
GIILTVLIFS VRQRIKINSK NDSK
|
|---|
| |