Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2483 |
Symbol | |
ID | 8358641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 3057263 |
End bp | 3058777 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644964669 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003122172 |
Protein GI | 256421519 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.35671 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGAAAT CAGCTTCTTT TACCGGATAT GGCTTTCGCC ATGCATGTAT CACCCTTATA GCTTTTATTT GTGTCCTGGT GGCAGTTATG AATTGCACCG TAACAAATGT GGCGTTTAAC GAGATAAGGG GCAACCTGGG TGTCTCGCTG GATGAAGTCA GCTGGGTAAC GACTGTATAT GTACTCGCCT ATATAGCTAT TATCCCTTTC AGCAACTGGC TTTCCCGGAA ACTGGGTAAC AAGAAATACC TCATTATCAC ACTTATCCTG TTTATCGTTT CTTCCTTTCT CTGTGGCAAC GCTACCAGTA TAGAAGAACT GTTAATTTTG CGTTTTTTAC AGGGATTAGG TGGAGGCGCT ATGCTGGTAT TGTCACATAC AATGATCCTG GAAAACTGGC CGCCGCAAAG ACGGACTACT GCCCAGGCAT TTTTTATATT GGGTATGTTG GGTGGAAATA TGCTGGCTGC GCCTTTTGGT GGATATATAA CAGACAATTA CACCTGGTCT TATATTTTTT ATCCGAATAT ACTGGTGGGT ATCCTGCTGT GTATACTGGT CCTTGTTTTT GTAGAAAACA AACGATATCA GCAACGGGAA GACTGGCTGG GAACGATCAT GGTGAGCATC GGAGCATCCT GCCTATATCT GGCGCTGACA AGAGGACAGC AGGAAGAGTG GTTTAAGAGC CCCTTTATCA TTGTTCTGCT GCTATGTGGA TTGGTGGGGC TCGTTATTTT TATCCGCAGA GAATTAGAAT GGATCACCCC ACAGGGAGAG AATGGTTTAT TGCGGAATGT GAGTCTGCGT AATGGTCTGA TATTAGCATT CGTTGCCGCC TTGGGTATAG CCGCTTCCTC TTCTACGATA ACAATTCCGC TCCGATGGCA CGCACAATTG CCAAAGATAT CCCCCTGGCT GGTGATTGTT TGTATTATTT TGGTAATGGC CCTGATCACG ATCCTCATAG AAGAAAAGAA GGCCCTGAAA TACATATTGG CAGCAGGTCC GATCCTGTTG ATTATTTATA ACTATATGGT ATTCCAGCAG CCGGTAGCAC CGAAGTATAC CACCTACATA TACTATCTGC TGGCTGTACG GATACTGGCT GTCATATTGT TGTCCATATC AGTAAGCACA TTCGTCTTCT CAAAACTGGA AAATAAAGAA ATCGGCCCCG GGGTACGCAT GTATCACCTC GTACAGCAAC TGGGTTTAGC CCTTGGTATT GCGTTATTTT CTGCATTTAC CTACAAAGCG CCGGAACCAG ATTACACAAG GTTCTTAGGA CACCTGGACC TGAAAGACCC GGTAGTACAA AAGGCGATCA GGGAGAGTAC TACCTCCTTA GATCAGGTAC GTGCTGAAGC ATTCGTTAGA CAGGCGCATG ATACGCAGGT TGGCGTGGTG AAAGCCAACT TTATGCTTAT GATAATTGCG GGCATTATTT TAACGGTACT TATCTTTTCA GTGCGGCAGC GGATTAAAAT CAATTCAAAA AACGACAGCA AATAA
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Protein sequence | MEKSASFTGY GFRHACITLI AFICVLVAVM NCTVTNVAFN EIRGNLGVSL DEVSWVTTVY VLAYIAIIPF SNWLSRKLGN KKYLIITLIL FIVSSFLCGN ATSIEELLIL RFLQGLGGGA MLVLSHTMIL ENWPPQRRTT AQAFFILGML GGNMLAAPFG GYITDNYTWS YIFYPNILVG ILLCILVLVF VENKRYQQRE DWLGTIMVSI GASCLYLALT RGQQEEWFKS PFIIVLLLCG LVGLVIFIRR ELEWITPQGE NGLLRNVSLR NGLILAFVAA LGIAASSSTI TIPLRWHAQL PKISPWLVIV CIILVMALIT ILIEEKKALK YILAAGPILL IIYNYMVFQQ PVAPKYTTYI YYLLAVRILA VILLSISVST FVFSKLENKE IGPGVRMYHL VQQLGLALGI ALFSAFTYKA PEPDYTRFLG HLDLKDPVVQ KAIRESTTSL DQVRAEAFVR QAHDTQVGVV KANFMLMIIA GIILTVLIFS VRQRIKINSK NDSK
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