| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2201 |
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| Symbol | |
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| ID | 8358353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 2719593 |
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| End bp | 2720174 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644964385 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003121894 |
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| Protein GI | 256421241 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.234024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000000056157 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAACAGCT ATTGTGACCT GACAGATGAA GAACTCATAA GATTGTACAG ATCCGGCGAC
GACCGTGCAT TTACGGCACT CGTGCACAGA CATAAGAACA GGATCTTTAC AACCATCATG
CTGTTGGTAA AAGACAGATG TCTGGCGGAA GATATATTCC AGGATGTGTT CATAAAGATC
ATCAATGCCT TCAATGAAGG TCATTACCTT GACAACAGCC GCTTTATAGC CTGGGCCGTC
AGGATTGCCC ATAATTGTTG TATCAGCCAT TTTCGTAAAA AGACAGCCGC TTTTGCCATT
ATCTACAGAG ATGAAATTTC CAATCAGATA TACCACCAGG TTGAAAGTCA GGAACAACGT
ATTATCACCA GAGAAACGCA CGCCTCTGTA CAGATGCTCA TAGATCGTTT GCCGGAAGCG
CAGCGGGAAG CGCTTATTTT AAGATATTAT GCCGACCTCT CCTTCAAAGA GATCGCCCAG
ATCGTTAATG TAGGTATTAA TACCGCATTA GGAAGGGTGC GGTATGCCGT CATGAATATG
CGTAAAATGA TGGAAAGAGA AACAAGCCCT GAAGTCGTAT AA
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| Protein sequence | MNSYCDLTDE ELIRLYRSGD DRAFTALVHR HKNRIFTTIM LLVKDRCLAE DIFQDVFIKI
INAFNEGHYL DNSRFIAWAV RIAHNCCISH FRKKTAAFAI IYRDEISNQI YHQVESQEQR
IITRETHASV QMLIDRLPEA QREALILRYY ADLSFKEIAQ IVNVGINTAL GRVRYAVMNM
RKMMERETSP EVV
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