| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2190 |
|---|
| Symbol | |
|---|
| ID | 8358342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2693059 |
|---|
| End bp | 2694066 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644964374 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003121883 |
|---|
| Protein GI | 256421230 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0300153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000017551 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAACA GGAAGGAATA CCTAAAGCAA CTGTTGCAAC AAAAGGAGTG GAAACAGGAA
GACCGGGATT GGCTGCTGCA GTATTTAAAT GAGAACGATC TAACGGATCT GAAGGATGCA
GCATCAGCAG CATATGAGGC TGACCTGCAA AGCACAGACC CAGTATTGGA ACGAGAACAC
TCAGCGCGCA TACTGGAGCA GATACATCAG CGCATCAGCT TACCGAAGGG CGCTGTTGTG
AGAAGTATGT GGTTCAGTCG CTGGAAAGTA GCTGCTGCCG CCATTATTAT CCTGGTTGCA
GGAGCAGGCA TTCTGAGCCT GTTCAGAAAA CCCGTAAAAC AGCTTTTAGT TACAGCGGAG
AAACAACGGA AGACATTTAC ACTGCCCGAT GGGACTATTG TGTATCTGGA ACCCGGAACG
ACTATACAGT ATGCTACCAG CTATGGTAAA GAAGAACGTA ATGTGACACT GACAGGTGAG
GCACTGTTTA AGGTAGAAAA AGATGATGCA CATCCATTTA TTGTAGCATC ATCGCTGATC
AGCACCAGGG TATTGGGTAC CTCTTTTAAT ATGGAGGTGA GAAACAGTTC TGAGGCAAAA
GTAGTGGTGC TGAATGGTAT GGTACAGGTG GAGGCAAAAG GAGAGGAGAA CCAGCAGGGA
AAGGAGCTGA TCCTGACAGC CAACAAGAGT GCGGTATATA ACAAGGACAC GCATCTGCTT
GAAATGTCTG ATGCCACAGA TGATGCACGG TTTTATTCGC AGAAACAACA AGGACGGTTT
GTATATGATG GAGAAGAACT TATAAAAGTA GTAAACGACC TGCAGAGATA TTATAACGCG
GAGATCAGAT TAGATAAACG AATACAGCAC TGTGCATTTT ATGGAGATGT AAACATTGTG
GATGACCTGG AGAAGGCACT CGATCTGATC GCAGTGTCGC TGAACGCCAA AATCAATAAG
GATAAAAATG GAAACGGCTA TATGATTGCC GGAGGTAACT GTCAATAG
|
|---|
| Protein sequence | MQNRKEYLKQ LLQQKEWKQE DRDWLLQYLN ENDLTDLKDA ASAAYEADLQ STDPVLEREH
SARILEQIHQ RISLPKGAVV RSMWFSRWKV AAAAIIILVA GAGILSLFRK PVKQLLVTAE
KQRKTFTLPD GTIVYLEPGT TIQYATSYGK EERNVTLTGE ALFKVEKDDA HPFIVASSLI
STRVLGTSFN MEVRNSSEAK VVVLNGMVQV EAKGEENQQG KELILTANKS AVYNKDTHLL
EMSDATDDAR FYSQKQQGRF VYDGEELIKV VNDLQRYYNA EIRLDKRIQH CAFYGDVNIV
DDLEKALDLI AVSLNAKINK DKNGNGYMIA GGNCQ
|
|---|
| |