Gene Cpin_2009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2009 
Symbol 
ID8358160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2449519 
End bp2451765 
Gene Length2247 bp 
Protein Length748 aa 
Translation table11 
GC content48% 
IMG OID644964196 
ProductCellulase 
Protein accessionYP_003121705 
Protein GI256421052 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2730] Endoglucanase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.428719 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0728263 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA ATGGATCTAA CCTTTCTTTC CGGCTGGCTG CATTATTACT ATGCCTGCTG 
GGGTTTAGTT CACAAACACA CGCACAGACG CCCGTTCAGA AAAACGGTCA GTTGCAGGTG
ATCGGTACTA AATTATGCAA TCAGTATGGC AATCCGATCC AGCTCAGAGG CATGAGCACA
CATGGTATCC AATGGTATGG CTGGGGAAGC TGTCTGACAG CTGCTTCACT CGATGCGCTG
GCATACGACT GGGGCGCCGA CATCCTGCGT ATCTCACTCT ATGTACAGGA AGGCGGTTAT
GAAACCGATC CTACCGGCTT TACCAATCAG GTGAACCGCC TCATAGAAGA AGCTACCGCA
CGTGGTATGT ATGCACTCGT TGACTGGCAT CAGCTCACAC CAGGCGATCC TAACGCCAAC
CTGGCCAGAG CAAAGACTTT CTTCTCTGCC ATCGCCAACA CACACAAGAA CAAAAACAAC
ATCATCTACG ACATCTGTAA TGAGCCCAAC TCAGGCGCAA CCTGGGCGAA GATCAAAACT
TACGCGGATC AGATGATTCC GTTTATACGC GCTATCGACA ATGACGCCGT CATACTCGTA
GGTACACACG GATGGTCTAC TATGGGCCTC TCCGGTGATG GTTCGCTGCA GGATATTTTC
AACAATCCGC TGACACATGG TAACGTGATG TATACATTCC ATTTCTATGC AAAAGATCAT
CGTACCGCAT ATCTCAATCA GCTGAATACT GCTTCTGACA GACTGCCTGT CTTCGTAACA
GAATTCGGTA CGCAGGAAGC CAGCGGAGAC GGCGCTAATG ACTTTGCCAT GGCGCAACAG
TACATCGATC TGATGGCACG TAAGAAGATC AGCTGGACCA ACTGGAACTA CTCTGACGAC
TTCCGTTCCG GCGCTGTATG GATAACAGGT ACCTGCTCCA ATGGCCCGTG GACAACCGCC
AGACTAAAAC CTGCCGGCGC ATGGATACGT GAGCGTATAC TGAATCCTGC GGATGATTTT
CCAGGAGGAA ATGTATGTGT GCCGGTATCT GCCAGCGCAA ACGATGGTAA CGTACCAGCC
AACGTACAGG ATAATGATTA TAACACCCGC TGGTCAGCAG AAGGCGACGG TCAGTGGATA
CAATTCTGCC TGGACAACAC CACTACTGTA AGCGGTGTCA ATATTGCATT CTATAGTGGT
ACTGTAAGAC GCACCTTCTT CGATATCCTG ACCAGCACAG ATGGCAGCAA CTGGGTATCC
GCAGCAAGCG GTCTGCAAAG CAGCGGTACC TCCAATGCAT TGGAAGCATT CACCTTCACA
CCACGTAGTG CAAAACATGT ACGGATCGTG GGTCACGGTA ACAGTGCAAG TGCCTGGAAT
AGTCTGACAG AAGTACGTAT CATTACCACT TCTTCCACAC AACAATCAAC ACTCGCACCT
TTACAGGATG CGTATGTAAG AAACGGCGAC TACGCAGCTA TTACACATGG TACTACTGAT
GCAACAGTAT TGGCATCTAA AATAAACGCA ACGGCTACTA CAGGCTACGA CAGACAAAGC
TTCCTTCGCT TTGATGTAAG TGGTGTTAAC AACATCTCTT CTGCCGTGTT AAAAGTATAT
GGTAAAATTG AAGATAACCG CGTTGCGAAT CTGCCAATAG GCGTGTATGC AGTTGCTAAC
ACAAGCTGGA CAGAATCCGC ACTCACCTGG AATAATAAAC CTGCTACAGG TAGCACTGCA
TTACAGACAG CCGTAGTGAC TGACTCAGTT GGCAGATACT ATTCATGGGA TATCACCAAC
TATGTACAGA CGGAAAAAGC AGCCGGACGT AATGGTATTT CCCTGGCATT ACTGAGCAAT
ACCGGCGCTG ATCCACGTGT CATCTGGAGA TCTAAGGAAG CAGGACTGAC AGCTCCTCAG
CTGGTGATCG CTTCCACTCC AACAGCCGCT AAACTGGCAG CCAGTGCACC AGAAAAAGCA
CCTGTAAAAC TGATTACTAC ACTGACCAGT TATCCAAATC CATTCGATGA CAACAGCACC
GTTAGTTTCT TCCTGGATAA ACCAGCAGAC GTATTACTGG CGGTATATGA CATCAATGGT
AAACAAGTGG CAATACTGAA ACGCGGCCGT CTGGATGCGG GTCAATACAA TACCAGCCTC
GCAGCCAGCC ATCTGCCAAA AGGTATTTAT ACACTGAAAC TGACCTATGG AGAGAAGGCA
ATAACAAGGA AGGTAGTGAA ACAATAA
 
Protein sequence
MKKNGSNLSF RLAALLLCLL GFSSQTHAQT PVQKNGQLQV IGTKLCNQYG NPIQLRGMST 
HGIQWYGWGS CLTAASLDAL AYDWGADILR ISLYVQEGGY ETDPTGFTNQ VNRLIEEATA
RGMYALVDWH QLTPGDPNAN LARAKTFFSA IANTHKNKNN IIYDICNEPN SGATWAKIKT
YADQMIPFIR AIDNDAVILV GTHGWSTMGL SGDGSLQDIF NNPLTHGNVM YTFHFYAKDH
RTAYLNQLNT ASDRLPVFVT EFGTQEASGD GANDFAMAQQ YIDLMARKKI SWTNWNYSDD
FRSGAVWITG TCSNGPWTTA RLKPAGAWIR ERILNPADDF PGGNVCVPVS ASANDGNVPA
NVQDNDYNTR WSAEGDGQWI QFCLDNTTTV SGVNIAFYSG TVRRTFFDIL TSTDGSNWVS
AASGLQSSGT SNALEAFTFT PRSAKHVRIV GHGNSASAWN SLTEVRIITT SSTQQSTLAP
LQDAYVRNGD YAAITHGTTD ATVLASKINA TATTGYDRQS FLRFDVSGVN NISSAVLKVY
GKIEDNRVAN LPIGVYAVAN TSWTESALTW NNKPATGSTA LQTAVVTDSV GRYYSWDITN
YVQTEKAAGR NGISLALLSN TGADPRVIWR SKEAGLTAPQ LVIASTPTAA KLAASAPEKA
PVKLITTLTS YPNPFDDNST VSFFLDKPAD VLLAVYDING KQVAILKRGR LDAGQYNTSL
AASHLPKGIY TLKLTYGEKA ITRKVVKQ