| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1988 |
|---|
| Symbol | |
|---|
| ID | 8358139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2427750 |
|---|
| End bp | 2428532 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644964176 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003121685 |
|---|
| Protein GI | 256421032 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.730129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGT TTAGATTAGA CAACAAAGTG GCTGTGATCA CCGGTGGTGG CAGCGGCATA
GGGCAGGCAA TAGCGAAGGT ATTTGCGGCG CAGGGCGCTG ATGTACATAT TATTGAGTTG
AACGAGGAAG GCGGTAAACA AACGGCAGCT GAAATTGCAG CAGCGGGCGG TACTGCACAG
GTACACGCCT GTAACGTAGC ACAGCAGGCG GCTGTAGTCA GCACGGTGGA TAAGATCATC
GCTGCGGCAG GTCGTATTGA TATACTGGTT AACTGTGCCG GTATTGCACA CGTGGGCAAA
CTTGAATCCA CTACGGAAGA AGATCTGGAC AGGGTATATA ATGTGAATGT GAAAGGTACA
TACAACTGTA TGTTTGCGGT GATCAAACAG ATGAAAGAAC AGAAAGGCGG CGTAATCCTG
AATGTGGCTT CCATTGCTTC CAGCGTGGGT ATTCCTGACA GGTTTGCATA CTCTATGAGT
AAGGGTGCGG TACTCACTAT GACCCTTTCT GTGGCGAAGG ACTATATTAA TGACGGTATC
CGTTGCAACT GTGTGTCTCC TGCGCGTGTA CACACACCAT TCGTAGACGG TTTCATCACG
AAGAACTACC CTGGTAAAGA GCAGGAAATG TTTGATAAAC TGTCAAAAAC ACAACCGATC
GGCCGTATGG CTAAACCTGA TGAGGTAGGT ACACTGGCTT TATTCCTGTG TTCTGCCGAA
GCTGGATTTA TCACTGGTTG TGATTATCCT TTGGATGGAG GATTCATCAA GCTGAATAAT
TAA
|
|---|
| Protein sequence | MNLFRLDNKV AVITGGGSGI GQAIAKVFAA QGADVHIIEL NEEGGKQTAA EIAAAGGTAQ
VHACNVAQQA AVVSTVDKII AAAGRIDILV NCAGIAHVGK LESTTEEDLD RVYNVNVKGT
YNCMFAVIKQ MKEQKGGVIL NVASIASSVG IPDRFAYSMS KGAVLTMTLS VAKDYINDGI
RCNCVSPARV HTPFVDGFIT KNYPGKEQEM FDKLSKTQPI GRMAKPDEVG TLALFLCSAE
AGFITGCDYP LDGGFIKLNN
|
|---|
| |