| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1890 |
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| Symbol | |
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| ID | 8358041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 2304429 |
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| End bp | 2305028 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644964078 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003121587 |
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| Protein GI | 256420934 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTATAGTA ATTATACTGA CCAAGAATTA CTATCGCTGC TCCAACAAGA CAGTGTAAAT
GCTTTTAACG TTATTTATGA GCGTTACAGT CAACCTTTAT ACCTTTATAT CCTCAGTAAA
ATAGATGGTT CAGAAGCCGG CAAAGACGTA TTGCAGGACC TGTTTACCTC TCTGTGGGAA
AGGAGGCAGT CTATCAGCGT CAATGAATCC CTGAAGTCTT ACCTGTACCA GTCAGCCAGA
CATAAGATCA TTGATATCTA CCGTAAAAAT TCCACCTATC GTAAATACCT GCAACAACTG
ATCGAACACT TCGACGTACA GCCGGGCGGC ATCGCCGAAC TGGTTGACAG CAAGACCCGT
ACACAGGATG TGTTTGAAAC GATCAATCAT CTTCCCGAAC GTATGAAAGA GATCTTTATG
CTGAGCCGCG TTGAGCATCA GACAGTTGAG CAGATAGCCG TCAGGCTCGG ACTTTCACAG
CAAACCGTTA AAAATCAGAT TACCAAAGCC CTTAAGATAC TTAGAGCCAA TCATGCCAGA
ACAGATCTTG TACTGTTTCT ACTCACAACA CAGGCGATTT ACTCATTTTT TGCTAATTAA
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| Protein sequence | MYSNYTDQEL LSLLQQDSVN AFNVIYERYS QPLYLYILSK IDGSEAGKDV LQDLFTSLWE
RRQSISVNES LKSYLYQSAR HKIIDIYRKN STYRKYLQQL IEHFDVQPGG IAELVDSKTR
TQDVFETINH LPERMKEIFM LSRVEHQTVE QIAVRLGLSQ QTVKNQITKA LKILRANHAR
TDLVLFLLTT QAIYSFFAN
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