Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1886 |
Symbol | |
ID | 8358037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 2294751 |
End bp | 2297942 |
Gene Length | 3192 bp |
Protein Length | 1063 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644964074 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003121583 |
Protein GI | 256420930 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATCCCC GCATCCAGAC GCCCATACTA TGTCAAAAAA GGGTTCAAAC ATTTCAACCA AAAGGAGTAT CTATGAGAAG TAAACTACGC TTTAACAAAG CATGCGTTAC TGCAGGAGTA ATGCTCGGTC TGATGCTTAC GGAAGGCATA CAGACCTCAT ACGCAGCTCC TATGCCCCTC TCCAGCATGA GGCAGCAGAA GCAGGTAAGG GGTGTCGTTA GGGACAAAAA CGGCAATCCC ATCCCAGGTG TCAACGTTCT GGTAAAAAAC GGCGCAGCAG GAACTGCTAC CGGACCAGAC GGAAAATTTG TTATCTCTGT TAAATCCCCT ACTGACATTC TCGTATTCAG ATTCATCGGC TATCTCACAC AGGAAGTACC GGTCGGCGAA CAAAGTTCTA TTGATGTAAC CCTGCTCGAA GATGTTGCTA ACATTAATGA AGTTGTAGTA ACAGCATTGG GTATACGTAA AGAAGCGCGT AGCAATGGTT ACGCCGTATC AAAAGTACAG GGCGCTGATA TGACCAAAGC AAGAGAGATC AGCGTAGCCA ATGCACTGGT AGGCCGCGTA GCCGGTGTGA ACAGTGCTCC TCCTGCTACA GGTCCGGGTG GTTCTTCCCG CGTAACAATC AGAGGTAACT CTTCCCTGAG TGGTAACAAC CAGCCGCTGT ACGTAGTGAA CGGTGTTCCT ATGAACAACG CGAACCTCGG TTCTGCTGGT AAATGGGGTG GTACTGACCT TGGTGATGGT ATCTCCAGCA TTAACCCGGA TGATATCGAA GATATGACCA TCCTGAAAGG AGCAGCAGCA TCTGCATTAT ACGGTCAGCG TGGTGTAAAC GGCGTTATCC TGATCACTAC CAAATCAGGT AAAGCAGGTC AGATGCGCGT TGAACTGAAC AGCAACGTAA CCGTTGAAAA AGTAAATGAC TTCTTCGATT TCCAGGACGT ATATGGTCAG GGTATCAAAG GCGCAAAACC TACCGATCAG CAGTCAGCAC TGAACAGTGG CTTGTCTAGC TGGGGTAGCA AACTGGATGG TTCTTCCACT ACATTATTTG ATGGTAAAGC ACATCCTTAC TCCAAACAGG GTAACCATAT TAAAGACTTC TATAAAACAG GCGCTACTTA CAGCAACACG TTATCCATCT CAGGCGGTAG TGATAAAACC ACTTACCGTG TGGCATTGGG CGACCTGCGC AGCAAGGGCG TTTACCCAAA TACAGAGTAT ATCCGCGATA ACGTAAACAT TGATGTCAAC TATAAGTTAT CTGACAAATT CAGCGGACAG ACCAATGTTA TTTACGCGAA AGAAATTACC AATAACCGTT CTAACCTGAG TGATGCTCCT GGTAACGGTA ACTATGGTAT CGCATTCCTG CCGGCCAACG TAGCTGCCAG TTACCTGGAA CCAGGTTATG ACGGACAGTT TAAAGAACTG GTATATAGCA GCGACCTTTT CAGTACGAAT CCTTTCTTTG CAGCAAACCG CTTCAGGAAC AATACAAAGA AAGACCGTGT TATCGGCGTA ACCAGTTTAC GTTATACGCC TTTACCATGG TTATTTGTAC AGGCTCGCGT AGCGAATGAC TACTTTGGTT TCAATGCTAC TTCCATCACT CCTACCGGTA CTGCTTACCG CCCTGCGGGA AGCCTGGACC TGGAGCGTAA CCGCCAGTTC AATGAAACCA ACGTGGACGC GTTACTGGGT ATCAACAAAG AAATCACCAA CAAGTTAAAC CTGAGCTTCA CTGCCGGCGC CAACCTGTTA AAGAAGGTGG ACAAGGTAAA TGATGTTACT GCCTCCAATT TTGCTTTCCC ATTTGTTTAC AACCCGGCTA CTGCTGCTAC GAAGAACAGT ACCATCATAC AATACAATAA ACAGGTACAG TCCGTATACG GATCATTGGA ATTGTCCTGG GCCAGCACTT TATATCTGAC GGTTACTGAC CGTAACGACT GGAGTAGTAC ACTGCCTAAG AAAAATAATT CCTATAACTA TCCATCTGTA AGTGGTTCCT ATGTTTTCTC TGAAAACATT AAGACCAACT GGCTCAGCTT TGGTAAGATC AGAGCAGGTT ATGCACAGGT AGGTGGTGAT GCGGATGAAT ATAAAACTGC GCTGTACTAC AGCACACTGG GAAATACTGT CAATGGCGTA CCACTGGGCG ACATCGACAA CAAAATTCCT AACAAAGAAC TGAAACCACT CAAAGTAAAA GAAATAGAAG TAGGCGCTGA ACTGAAACTG TTTGACAATC GTTTATTTGG TGATTTCAGC TGGTACAACA AACAGGCTTC TAATGACATC GTAACGGCTA CAGTATCTTC CGGATCTGGT TACACCAGCG CGCTGGTGAA CGTAGGTAAA CTGGAAAACA AAGGTATTGA AGCGATGATC GGTGGTACAC CTGTGAAGAC AGCTAACTTC TCCTGGACGA CTACGTTCAA CTTTGCCCAC AACAAAAACA AAGTAATACA GCTGGCAGAA GGTCAGGCAT CTATGCTGGT GGAAGGTGGT GAATCCCGCA CGGAAGATGG TTTCATCAAC CACGTGGTAG GACTGCCATA TTCACAGATC ATGGTGTATG ACTTCAAACG TAACGCGAAA GGAGAATTGA TCGTAGATGC ATCAGGTGTT CCTCAGCGTA CAGACGCACT GATCGCAGCT GGTTCAGGCG TAGCGCCTTA CACTGGTGGC TGGAGCAACG AACTGTCTTA TGGCAAGTTC CACCTGAGCT TCCTGATCGA CTTCAAATCA GGTGGTAAAA TCTATTCCGG TACCAATGCC AACGCTTATA GCTATGGTCT GCACAAAGAG ACACTGGCAG GACGTGAAGG CGGTGTTGTA GTAACCGGTG TAACTGAAAG TGGCGACGCA AAAACAACGA CTGTTGTGGC GGACGACTAC TACTCAAGAC TGTCCAGCAT CTCTGCATTG CAGGTATATA AATCAGACTT CATCAAATTC CGTTCACTGG CACTGACATA TGACTTTTCC AGAGCAGCAC TGCACGAAAA ACTGAATGGT ATCAGCATCT CTCTGGTAGG ACGTAACCTT TTCTACATCA AGAAATCAAC GCCTAACATC GATCCTGAAT CCAACTACAG CAACAGCAAC GCACAGGGTC TGGAATATGC AGGTCTGCCT ACTACCCGTT CTATCGGTGT GAACCTGAAT GTTAAATTCT AA
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Protein sequence | MHPRIQTPIL CQKRVQTFQP KGVSMRSKLR FNKACVTAGV MLGLMLTEGI QTSYAAPMPL SSMRQQKQVR GVVRDKNGNP IPGVNVLVKN GAAGTATGPD GKFVISVKSP TDILVFRFIG YLTQEVPVGE QSSIDVTLLE DVANINEVVV TALGIRKEAR SNGYAVSKVQ GADMTKAREI SVANALVGRV AGVNSAPPAT GPGGSSRVTI RGNSSLSGNN QPLYVVNGVP MNNANLGSAG KWGGTDLGDG ISSINPDDIE DMTILKGAAA SALYGQRGVN GVILITTKSG KAGQMRVELN SNVTVEKVND FFDFQDVYGQ GIKGAKPTDQ QSALNSGLSS WGSKLDGSST TLFDGKAHPY SKQGNHIKDF YKTGATYSNT LSISGGSDKT TYRVALGDLR SKGVYPNTEY IRDNVNIDVN YKLSDKFSGQ TNVIYAKEIT NNRSNLSDAP GNGNYGIAFL PANVAASYLE PGYDGQFKEL VYSSDLFSTN PFFAANRFRN NTKKDRVIGV TSLRYTPLPW LFVQARVAND YFGFNATSIT PTGTAYRPAG SLDLERNRQF NETNVDALLG INKEITNKLN LSFTAGANLL KKVDKVNDVT ASNFAFPFVY NPATAATKNS TIIQYNKQVQ SVYGSLELSW ASTLYLTVTD RNDWSSTLPK KNNSYNYPSV SGSYVFSENI KTNWLSFGKI RAGYAQVGGD ADEYKTALYY STLGNTVNGV PLGDIDNKIP NKELKPLKVK EIEVGAELKL FDNRLFGDFS WYNKQASNDI VTATVSSGSG YTSALVNVGK LENKGIEAMI GGTPVKTANF SWTTTFNFAH NKNKVIQLAE GQASMLVEGG ESRTEDGFIN HVVGLPYSQI MVYDFKRNAK GELIVDASGV PQRTDALIAA GSGVAPYTGG WSNELSYGKF HLSFLIDFKS GGKIYSGTNA NAYSYGLHKE TLAGREGGVV VTGVTESGDA KTTTVVADDY YSRLSSISAL QVYKSDFIKF RSLALTYDFS RAALHEKLNG ISISLVGRNL FYIKKSTPNI DPESNYSNSN AQGLEYAGLP TTRSIGVNLN VKF
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