| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1741 |
|---|
| Symbol | |
|---|
| ID | 8357891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2109218 |
|---|
| End bp | 2110978 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644963928 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_003121438 |
|---|
| Protein GI | 256420785 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG TATTTCTGAC AATGATAGCC CTGTCCGCGA TGCAGCTGGT ATGGGCACAA
CATAAAGTGA GTTATCTGAA AGCCGCGGAT AGCTATTACA AACAGGCAGA TTATTATTCA
GCTTCTATGT ACTATGAAAA GTACCTGGCT GTGAATATCA AAGCTGCTGC TAAAGAAGGA
TATAATCCAT ATACAGCGCC GGGTGGTACG GCGAAGCCTG CACCTTCAGC AGATGAAGTG
CTGGCGGCTT ATCAGTTGGG TGATAGTTAT CGTCACTTAC ACGATCATGA TAAGGCAGCG
CCTTTATTTG CAAAAGTAGT AGCGGCTGAT AGCAGCCGTT TCCCGCTGGC AGCTTATTAC
TACGGAGAAA GTTTACGTGC ACTGGCAAGA TATGATGCCG CTGAAGCTGC GTTCAAAGAT
TTCCTGTCCC GCTATGATAA AAAGGATGCA TACAGTAGTG CGGCAGCGCA GGAGCTACGT
AACCTGCCTT TTATCCGCGA ACAGTTACAG CAAAAAGAGC AGTCCGATTA CCATATAAGA
AAAGCGTCCG CCGCGCTTAA TGCCGGCGGC GCTTCTTATG CGCCTGTATG GGCAGGTGAT
CAGTTAATAT ATACTTCTAC TAAAGAATCC AATTACACCA ACCGTATCTA TCTGGCGAAA
GATACGGCTG CTGTTACCAG CCGCGCCGGT ATTCCACAGG CAGCAAAGAC CCATCAGGGT
GCTGTAAGTA TTTCCGCTGA TGGGAATGTA ATGTATCTCA CACAATGGAC GACCGCTGAT
GGCAAGAAGT CAGCAGCTAT CTATTCCAGC TATAAAGAAG GGGATAAATG GAGCGAACCG
GTTAAACTGG ATGCGGTGAT CAATGCCGCA GGCGCTAATA CGCAACAGCC TTTTATCATG
TCTGATGGCC GCCATCTGTT GTTTGCCAGC GACAGGGCAG GAGGGCTGGG AGGATATGAC
CTCTGGAGCG CGGAACTGGA TGCTGCAGGT AAACCATTGT CTGTACAAAA TCTTGGACCA
GCCATTAATA CTTCTTCGGA TGAAGAAGCA CCTTTCTTTC ATCCTGCTTC CGGCACCCTG
GTGTTTGCCA GCAATGGCCG GACAGGTATG GGAGGTTTTG ATCTCTATTA TGCAAAGGGT
AATCTGACGA AATGGGAAAC GCCTGTCAAC TTCGGTTATC CGGTGAATGA TGTGAAGGAT
GATATGTATT TCTTCAGCCG CAGCAAATCG GAATATATCC TGGAAGATGC CTGGTTCTCT
TCCGACCGTT CTGCAGAATG TTGCCTGGAA TTATTCAGTC TGCACCTGGC GCCACCGCCG
CCGCCTGTGA AAGAAGAACC TGTAGTGGCT GTGACTCCTC CGCCAACCCT GGCCGATACC
ATCCTGAATG CGCCGGTGAA TACAGCCATT ACCATGCAGG AGATTTACTA CGAAGTGAAC
GAATTTATAC TGACGCCTGC TTCTCATCCG GCGCTGGACA AACTGGTGGC TTTACTGAAA
GACCATCCGC AGATGGAAAT AGAGATCAGT GCACATACGG ATAACACAGG TTCTGCCGCT
TACAACCAGC AACTGTCAGA AAAACGTGCA CTGAACTGTG TGGCTTACCT GGTGGATAAA
GGTATCGACA AGAAACGTTT ACAATACAAG GGATATGGCG CTACCAAACC GGTAGCACCT
AATACCAATC CTGACGGAAC AGATAATCCG GAAGGCAGAA GACTGAACAG ACGTATCGAA
CTGAGGATCT TAAAACAGTA G
|
|---|
| Protein sequence | MKKVFLTMIA LSAMQLVWAQ HKVSYLKAAD SYYKQADYYS ASMYYEKYLA VNIKAAAKEG
YNPYTAPGGT AKPAPSADEV LAAYQLGDSY RHLHDHDKAA PLFAKVVAAD SSRFPLAAYY
YGESLRALAR YDAAEAAFKD FLSRYDKKDA YSSAAAQELR NLPFIREQLQ QKEQSDYHIR
KASAALNAGG ASYAPVWAGD QLIYTSTKES NYTNRIYLAK DTAAVTSRAG IPQAAKTHQG
AVSISADGNV MYLTQWTTAD GKKSAAIYSS YKEGDKWSEP VKLDAVINAA GANTQQPFIM
SDGRHLLFAS DRAGGLGGYD LWSAELDAAG KPLSVQNLGP AINTSSDEEA PFFHPASGTL
VFASNGRTGM GGFDLYYAKG NLTKWETPVN FGYPVNDVKD DMYFFSRSKS EYILEDAWFS
SDRSAECCLE LFSLHLAPPP PPVKEEPVVA VTPPPTLADT ILNAPVNTAI TMQEIYYEVN
EFILTPASHP ALDKLVALLK DHPQMEIEIS AHTDNTGSAA YNQQLSEKRA LNCVAYLVDK
GIDKKRLQYK GYGATKPVAP NTNPDGTDNP EGRRLNRRIE LRILKQ
|
|---|
| |