| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1635 |
|---|
| Symbol | secY |
|---|
| ID | 8357777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1974564 |
|---|
| End bp | 1975907 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644963815 |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_003121332 |
|---|
| Protein GI | 256420679 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAAAT TTATCGAAAC GATTAAGAAT ATCTGGAGCA TCGAGGATTT GCGTAGCCGC
ATTCTCACTA CATTGCTTCT TGTCCTCATC TATCGTGTAG GATCCTATAT CGCGTTACCC
GGTATTGATG CCAACAGTTT GGGTATGGGA GAGTTTGCCA ACAAGTCTGA AAAGGGTATC
CTTGGACTAT TCAACATGTT CGCAGGTGGT TCCTTCTCCA GGGCTTCCAT TTTTGCTCTT
GGCATTATGC CCTATATCTC TGCATCCATA GCCATACAAC TGCTTACAAT TGCCGTGCCT
TATTTCCAGA AATTACAGAA AGAAGGGGAA AGCGGTAGAA AAAAGATTAA TCAGTATACC
CGTATACTGA CAGTGATTGT GACTGGTCTG CAGGCAAGTG CATATGTTGC CTTCCTCAGA
CAGCAGTCTG CAGGTTCAAT AATCCCGGAA TACGGTGCAG CTTTCTTCTG GCTGACAACC
ACTGTAGTGC TTACAGCAGG TACCCTGTTT GTAATGTGGC TGGGTGAGAA AATCACAGAC
AAAGGTATTG GCAACGGTAC TTCTATCATA ATCATGGTCG GCATCCTTGC CCGTCTACCT
CAGGCGATCA TTCAGGAGTT CTCCTCCAGA AACGCGCAGA GTAATGGTGG TGCGATGCTG
TTCCTGATAG AGCTGGCTGT ATTCGTACTG ATCACTATCG GTCTGATCCT GCTGGTACAG
GGTACCCGTA AGATCCCGGT AAACTATGCA AAACGTATTG TTGGTAACAA ACAGTTCGGC
GGTGTACGTC AGTTTATTCC ACTGAAAGTA AACGCTGCTG GTGTAATGCC GATCATCTTT
GCACAGGCGA TCATGTTTAT TCCGGCTACA GCTATCGGTT TCGCAACTGA CAGCAACTCT
GGCTTCATTC GTATCTTCAG TGATCACACA AATGGCTGGT ACAACCTGAT TTATGCTGTA
CTGGTAATTG TGTTCACTTA TTTCTATACT GCCCTGATAT TCAATCCGAC CCAAATGGCG
GATGAAATGA AACGTAACAA CGGTTTCGTA CCTGGTGTTA AACCTGGTCA GGCTACCGCT
GATTACATCG GCGCTGTAAT GGACCGTATC ACCCTCCCAG GTGCATTCTT CCTGGCGATG
GTTGGTATCC TTCCAGGTGT TGCAGCAGCT GTGAATATCA ACAGTAACTT TGCTACCTTC
TTCGGAGGTA CCTCCCTGCT GATCATGGTG GGCGTTATCC TGGATACGCT CCAGCAAATA
GAAAGCCAGC TGCTGATGCG CCATTACGAT GGTCTCATGA GCACCGGCCG GATTAAAGGA
AGAACAGCTC CGGCTAACGT CTAA
|
|---|
| Protein sequence | MKKFIETIKN IWSIEDLRSR ILTTLLLVLI YRVGSYIALP GIDANSLGMG EFANKSEKGI
LGLFNMFAGG SFSRASIFAL GIMPYISASI AIQLLTIAVP YFQKLQKEGE SGRKKINQYT
RILTVIVTGL QASAYVAFLR QQSAGSIIPE YGAAFFWLTT TVVLTAGTLF VMWLGEKITD
KGIGNGTSII IMVGILARLP QAIIQEFSSR NAQSNGGAML FLIELAVFVL ITIGLILLVQ
GTRKIPVNYA KRIVGNKQFG GVRQFIPLKV NAAGVMPIIF AQAIMFIPAT AIGFATDSNS
GFIRIFSDHT NGWYNLIYAV LVIVFTYFYT ALIFNPTQMA DEMKRNNGFV PGVKPGQATA
DYIGAVMDRI TLPGAFFLAM VGILPGVAAA VNINSNFATF FGGTSLLIMV GVILDTLQQI
ESQLLMRHYD GLMSTGRIKG RTAPANV
|
|---|
| |