| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1587 |
|---|
| Symbol | |
|---|
| ID | 8357729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1930322 |
|---|
| End bp | 1930921 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644963767 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003121284 |
|---|
| Protein GI | 256420631 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.387563 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACA GTGAAAACAT CAGGTATTGG CAACAGCAGA TTGCTTGTGA AAATGATGAG
AAGGCCTTTT CAGAGCTGTT CCGGCATTTT TATGACCGGT TATTATATTT TGCCGTACAA
TACGTCTACA CCCGCGAAGC AGCAGAAGAG ATCGTCTCTG ACGTGTTCGT TAAAATATGG
AACCGTCGGA AAGAACTGGA CAAGATCGCT AATCTTGAAG TATATCTTTT CGTCGCTGTC
AAAAATCATT CGCTTAATTA TCTTGAACAA TATTCCGCAC TACGGATCGC TCCGCTTAGT
GACGATTCCG GCCTCTCTCA GCTGACGAAT CCCATCGATC CCGAAAGGAC GATGGAATGG
AAAGAAATCC TGTTCAAGAT GGACCAGGAG GTAGGGCGCC TGCCCGACCA GTGCCGTCGT
GTGTTCAAAT TGATCAAAGA GGAAGGGTTT AAATATAAAG ACGTCGCGGA AATTCTCAAC
ATCTCTCCGC GTACAGTAGA AACACAGTTG TTCCGCGCTA TGAAGCGCCT CAATGAAGTG
ATAGGTCCTT ATATCACCAA CAGGCTGAAA CCAAAAAATA AAAATCCGGA TTCCTTGTAA
|
|---|
| Protein sequence | MSNSENIRYW QQQIACENDE KAFSELFRHF YDRLLYFAVQ YVYTREAAEE IVSDVFVKIW
NRRKELDKIA NLEVYLFVAV KNHSLNYLEQ YSALRIAPLS DDSGLSQLTN PIDPERTMEW
KEILFKMDQE VGRLPDQCRR VFKLIKEEGF KYKDVAEILN ISPRTVETQL FRAMKRLNEV
IGPYITNRLK PKNKNPDSL
|
|---|
| |