Gene Cpin_1280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1280 
Symbol 
ID8357396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand- 
Start bp1530783 
End bp1531832 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content46% 
IMG OID644963436 
ProductUDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase 
Protein accessionYP_003120979 
Protein GI256420326 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 
TIGRFAM ID[TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0456821 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTTTA GCGCATTACA ATTGGCTACC ATGTTGGATG GTAAGCTGGA AGGCAACCCG 
GACGTAAAAG TGAGCAACAT CGCCAAGATC GAAGAGGCGG GTGAAGGGAT GCTCAGCTTT 
ATCGCCAATC CTAAGTACGA AGAGTTTATC TATACGACCA ATGCCTCCAT ACTGATAGTG 
AATGAGAGCC TTGTAACGGA AAAACCTGTA AAATCGACGC TTATCAGGGT AAAAGACGCC 
TACAGCGCCT TCGCCCTTTT ACTTGAAAAA TATAAGCAGA TCATGAGTAA TAAGACGGGT 
ATTCAACAAC CGTCTCATAT TCCTGCATCT GTAAAGACCG GACAGAATGT TTTCATCGGT 
GCTTTCGCCT ATCTGGGTGA GAATGTCGTG ATCGGTAACA ACGTAAAGAT CTACCCTGGA 
GTTTATCTGG GTGATAACGT GATCGTACAG GACGATACAA CTATCTTCCC TGGCGTAAAG 
GTGTACGAGA ATTGTGTACT GGGTAGCCGT GTGATATTAC ACGCAGGTTG TGTGATCGGA 
GGAGATGGCT TTGGTTTTGC ACCTCAGCCT GACGGTACCT ATAAAAAAGT ACCGCAGATC 
GGTAATGTGA TCATTCATGA TGATGTTGAG ATCGGCGCCA ATACCACTAT TGACCGTGCA 
ACTATGGGTT CTACGATCAT CCGCCAGGGC GTAAAGCTGG ACAACCTGAT CCAAATCGCG 
CACAACGTAG ATGTAGACAC CAATACAGTT ATAGCAGCAC AGACGGGTAT TTCCGGCAGT 
ACTAAAATTG GTAAGAACTG TGTGATTGGT GGTCAGGTTG GCTTGGTTGG ACACATCCAG 
CTGGCTGATG GCACCAAAAT CAATGCACAG AGCGGCCTGT CTAAATCTAT TGCAGAACCG 
AATTCAGCCC TAATGGGATC TCCTGCTTTT GATTATAAAA GCTCCTTAAA AAGTCAGGCA 
ATTTTTAGAA ATTTGCCCGA TCTGGAAAAA CGTGTGAAGG AATTGGAAGA CATGGTAAAA 
CAACTGCTTT CCGTGCGGGA AGGTGTTTGA
 
Protein sequence
MQFSALQLAT MLDGKLEGNP DVKVSNIAKI EEAGEGMLSF IANPKYEEFI YTTNASILIV 
NESLVTEKPV KSTLIRVKDA YSAFALLLEK YKQIMSNKTG IQQPSHIPAS VKTGQNVFIG 
AFAYLGENVV IGNNVKIYPG VYLGDNVIVQ DDTTIFPGVK VYENCVLGSR VILHAGCVIG 
GDGFGFAPQP DGTYKKVPQI GNVIIHDDVE IGANTTIDRA TMGSTIIRQG VKLDNLIQIA 
HNVDVDTNTV IAAQTGISGS TKIGKNCVIG GQVGLVGHIQ LADGTKINAQ SGLSKSIAEP 
NSALMGSPAF DYKSSLKSQA IFRNLPDLEK RVKELEDMVK QLLSVREGV