Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1250 |
Symbol | |
ID | 8357366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1494997 |
End bp | 1495914 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644963406 |
Product | protein of unknown function UPF0187 |
Protein accession | YP_003120949 |
Protein GI | 256420296 |
COG category | [S] Function unknown |
COG ID | [COG3781] Predicted membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000295826 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTATTGA AAAACAATAT CCCGTTTAAA TACGTTTTCG GGAAAATCAA ATATGAGGTC CTGCTTGTAG CGGTATATAC GTTAATCATA GTAATACTGC ATGACAGGTT TAACCTGAAG CACATGGCAA TTCCATTGTC TGTGCCGATG ATAATGGGTA CTGTAATATC TCTGTTGCTC GCCTTCCGCT CTAACCAGGC GTATGACCGC TGGTGGGAAG CAAGAACGAT ATGGGGTGCG ATAGTAAATG ATTCAAGATC TTTTACCCGA CAGGTGCTGT CCTTTGTTGA CGACTCTGCC TATGAATCTG AGGAAATCAA TCACTTCAGA GAGAGAATGG TACGCAGACA GATAGCCTGG TGTTACGCAC TTAGTCAGTC ACTGAGAGGA CTGGATGGAA AAGATGGTTT GGAAAAGCAT ATCTCTAAAA GAGAGGTTGC TTACGTATCA AGATTCGCAA ACATACCAAT GGCCTTGCTC GATCTGCATG CAAGGGATCT GAACTATGCC CTGAAAAAAG GCTGGCTCAA TGAATTCCAG CAGGTAACAC TTGACCAGAC ATTAAGCCGT CTGTGTGATG CAATGGGTAA ATGTGAGCGT ATTAAAAACA CCGTGTTCCC GGCTACGTAC AGTCTGTATA TTCATTTTGC AATGAACTTT TTCATACTGC TGTTACCGTT TGCACTGATA GAGTATTTCG GTTTGATTGA AGTACCATTG GTAGTAGCCA TTGCAGCATC TTTCCTCTTG ATAGAAAAGA TGGCCATTCA TCTGCAGGAT CCGTTTGATA ATAAACCAAC GGATACGCCG ATGACAACAA TTTCAAGAAA CATTGAACGT GATCTTAAGC AATTGCTGAA CGATCATCAT TTGCCGGAAA CGACGCAAAA TGTTGATCAT AAGTTCTACG TGATGTAA
|
Protein sequence | MLLKNNIPFK YVFGKIKYEV LLVAVYTLII VILHDRFNLK HMAIPLSVPM IMGTVISLLL AFRSNQAYDR WWEARTIWGA IVNDSRSFTR QVLSFVDDSA YESEEINHFR ERMVRRQIAW CYALSQSLRG LDGKDGLEKH ISKREVAYVS RFANIPMALL DLHARDLNYA LKKGWLNEFQ QVTLDQTLSR LCDAMGKCER IKNTVFPATY SLYIHFAMNF FILLLPFALI EYFGLIEVPL VVAIAASFLL IEKMAIHLQD PFDNKPTDTP MTTISRNIER DLKQLLNDHH LPETTQNVDH KFYVM
|
| |