| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1227 |
|---|
| Symbol | |
|---|
| ID | 8357343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1469778 |
|---|
| End bp | 1471547 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644963383 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003120926 |
|---|
| Protein GI | 256420273 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.175574 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAAATA CAGCGGTCAA GAAGGTTTTT GATATTAGCT TATTAAGGAG GATATTCACT
TATGCAGTTC CATACAGGCG CTCGTTCTAT CTTTCGATGT TCCTGACGGT GTTACTTGCC
GTTATATCGC CCATGCGGCC ATACCTGATA CAGCTAACAG TTGATAAATA TATTGCGGGT
CAGGTGATGC AGATGCTGAT CTATATCACT ATCGTACAGG TCATTCTCCT GTTATTGGAA
ACGGTCATGC GTTTCTATTT CTCCTATCTC ACTAACTGGC TGGGGCAGTC GGTCGTAAAA
GACCTTCGTG TGGCAGTATA CAGAAAGATC GTACACCTGA ACCTTGGCTT TTTTGATAAG
ACGCCTATTG GTACATTGAC AACCCGTACC ATCAACGATA TTGAGGCCAT TAACGATGTT
TTCTCAGAAG GACTGATCTC CATTATCGCC GATATGCTGA TGATCATTGC CATCCTGGTG
GTGATGTTCA TCGAAGACTG GCGCTTAACA CTGATAAGTC TTTCTCCTTT CCCGGTATTG
ATCATCGCTA CTTACATCTT CAAGGAAAGC GTCAACAAGT CTTTCTACCG GGTGAGAAAT
GCGGTATCGG CACTGAACGC CTTTGTACAG GAACACCTGA CAGGGGTAGT CATCGTACAG
GCTTTCACTG GTGAGAAACG TGAATATGCG CGCTTCCGCC AGATCAACAA AGAACACCGT
ACTGCCAATA TTGACGCCAT CTTCGCTTAC TCCGTATTCT TTCCGGTTGT GGAAATAATA
CTGGCTATTT CCCTTGGTCT GATGGTATGG TGGGGCGCTA ATAAAGTGCT GAACTATGAG
GTCACGCAAG GTGTGATGAT TGCTTTTATC ATGTACCTGA ACATGTTATT CCGTCCGCTG
CGTATGCTCG CGGATAAGTT CAATACCCTG CAGATGGGAA TGGTGGCCAG CGAACGCGTA
TTCCGTATCA TGGACAGCGA CGATCATATT GCCGACAATG GCACTAAAGA TGCCGCTGGT
ATGAAAGGCG CTATCACCTT TGATCATGTG TATTTTGCCT ATAAGGATGC CGAATATGTG
CTGAAAGACA TTGACTTCAG CGCTAATCCG GGAGATACCA TCGCTATAGT AGGCCATACA
GGATCGGGCA AAACAACTAT TATCAGCATC CTGAACCGCC TCTATGAAAT ACAGAAAGGC
CGTATACTGC TGGATGGAAC AGATATTAAG GACTTTACAC TGAAAGCGTT ACGCAGTAAG
ATAGGTGTAG TGTTACAGGA TGTGTTCCTG TTTGCAGGTT CGGTGTATGA AAATATAACG
CTGCGTAATC CGGCTATCAG CAGGGAGCAG GTGGAGCAGG CCGCAACCCT GATTGGACTG
CATGACTTCA TTTTACAGTT ACCAGGCGGT TATGACTACC AGGTAATGGA AAGAGGAAGT
ACCCTTTCCC TGGGGCAGCG CCAGCTGATT TCCTTTGTAC GTGCATTATT GTACGATCCA
TCGATCCTTA TATTAGACGA AGCTACCTCC TCAGTAGATA CAGAGTCTGA AATGCTGATC
CAGCGCGCTA TTGACAAGCT GATATCTGAC AGAACTTCTA TCATCATCGC GCACAGGTTA
TCTACTATCA GTAAGGCCAG CAAGATCATT GTGCTGGATA AAGGGGAGAT CCGGGAAATG
GGTACCCACG AAGAGCTTCT GAAACTGGAA GGATTCTACT ATAAGTTACA CAGCATGCAG
TTTAAGCAGA CAGGGGTGAA TATGAGCTAG
|
|---|
| Protein sequence | MENTAVKKVF DISLLRRIFT YAVPYRRSFY LSMFLTVLLA VISPMRPYLI QLTVDKYIAG
QVMQMLIYIT IVQVILLLLE TVMRFYFSYL TNWLGQSVVK DLRVAVYRKI VHLNLGFFDK
TPIGTLTTRT INDIEAINDV FSEGLISIIA DMLMIIAILV VMFIEDWRLT LISLSPFPVL
IIATYIFKES VNKSFYRVRN AVSALNAFVQ EHLTGVVIVQ AFTGEKREYA RFRQINKEHR
TANIDAIFAY SVFFPVVEII LAISLGLMVW WGANKVLNYE VTQGVMIAFI MYLNMLFRPL
RMLADKFNTL QMGMVASERV FRIMDSDDHI ADNGTKDAAG MKGAITFDHV YFAYKDAEYV
LKDIDFSANP GDTIAIVGHT GSGKTTIISI LNRLYEIQKG RILLDGTDIK DFTLKALRSK
IGVVLQDVFL FAGSVYENIT LRNPAISREQ VEQAATLIGL HDFILQLPGG YDYQVMERGS
TLSLGQRQLI SFVRALLYDP SILILDEATS SVDTESEMLI QRAIDKLISD RTSIIIAHRL
STISKASKII VLDKGEIREM GTHEELLKLE GFYYKLHSMQ FKQTGVNMS
|
|---|
| |